Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00283
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.34 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   1.4  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 750 ISYSVFSILNITLLSSQREMSCQLTWWL 667
           ++ SVF+++   LL   +EMS ++ +W+
Sbjct: 323 LALSVFALILTALLRKMQEMSIEVPYWI 350


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 98  STGPITKRCAADVARIVNASEGYVVAYGYSENSD 199
           +T PIT RC  +  +I +    +VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 ILKILTTFKISSVSWQKR 236
           +LK+LTT   + +SW KR
Sbjct: 48  VLKVLTTGLPALISWIKR 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 45  TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 158
           T TLP  S T      PSA   + +     + G +T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,786
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)