Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00283
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48540.2 68414.m05428 leucine-rich repeat family protein            32   0.49 
At1g48540.1 68414.m05427 leucine-rich repeat family protein            32   0.49 
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    31   1.1  
At4g35170.1 68417.m05000 hypothetical protein predicted protein,...    30   1.5  
At5g13900.1 68418.m01626 protease inhibitor/seed storage/lipid t...    30   2.0  
At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   2.0  
At5g60110.1 68418.m07536 pumilio/Puf RNA-binding domain-containi...    28   7.9  
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    28   7.9  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    28   7.9  
At1g77400.1 68414.m09013 expressed protein                             28   7.9  
At1g19360.1 68414.m02409 expressed protein                             28   7.9  

>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 321 TSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHE 500
           + ++ HL  LV   + +  ++ + +L   QG DV  +++S         ++S   +LW E
Sbjct: 232 SQVSCHLVKLVLRNNALTTLRGIENLKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLE 291

Query: 501 GHKTSSKITSRANSNSY 551
           G+        RA+  SY
Sbjct: 292 GNPVCCARWYRAHVFSY 308


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 321 TSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHE 500
           + ++ HL  LV   + +  ++ + +L   QG DV  +++S         ++S   +LW E
Sbjct: 232 SQVSCHLVKLVLRNNALTTLRGIENLKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLE 291

Query: 501 GHKTSSKITSRANSNSY 551
           G+        RA+  SY
Sbjct: 292 GNPVCCARWYRAHVFSY 308


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
 Frame = +3

Query: 24  SPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSP---GLSTRPKATSLHTDILKI 194
           SPS    T + P    ++++   PS    S SGA  +SP   G+ST   +++ +T     
Sbjct: 267 SPSIFGATGSSPFFGSSSSAGSTPSLFASSSSGATTSSPSPFGVSTFNSSSTSNTSNASA 326

Query: 195 LTTFKISSVSWQKRLILWSRYELPADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYIN 374
                 +  S+ K     +          QTA S+   F+  TS N+  +NL TG     
Sbjct: 327 SPFSASTGFSFLKSTASSTTSSTTPSAPPQTA-SSSSSFSFGTSANSG-FNLSTGSSAAP 384

Query: 375 AVKT 386
           A  T
Sbjct: 385 ASST 388


>At4g35170.1 68417.m05000 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 163

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 355 VTKLYKWLLIDVASAKTIFVLNAVWVFKSAGSSYRLHSISRFCQLTLEILNVVRIFRI 182
           +T+ Y  LL  +  A T+F L    V KS      L  I RF +L  E    + +F+I
Sbjct: 106 ITRFYSCLLFTLVLAFTLFCLILWGVSKSFAPIATLKVIDRFDRLERENFTFISVFKI 163


>At5g13900.1 68418.m01626 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 151

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 387 VRSLVDNQGSDVCRDVVSRLVSQGIKNAMSF--AYKLWHEGHKTSSKITSRANSNSYSTN 560
           ++S++ N    +CR + +R  SQ  +  +    A  L     +  + I     S   STN
Sbjct: 57  LKSVIRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTN 116

Query: 561 R*LSSSANITIKLSNWMLTLASTTT 635
              SSS   T   S WM TLA   T
Sbjct: 117 SDRSSSIGNTFSQSYWMTTLAIAAT 141


>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 349 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 263
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At5g60110.1 68418.m07536 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 327

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 66  SETTASKLLPSARGRSLSGALQTSPGLSTRPKATSLHTDILKILTTFKISSVSWQKRLI 242
           S +T    LP+ +G  +SG++   PG + R  AT LH  +  ++T      VS+ K +I
Sbjct: 9   SMSTMFNALPNPKG--ISGSIPP-PGFAPRASATPLHAALFNLMTDG--DGVSYFKEMI 62


>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 605 LDANVGEYNDRLTWGDGKDYTS 670
           L  + G Y + L WG G D+TS
Sbjct: 117 LTHSTGPYGENLFWGSGSDFTS 138


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
           transcription factor HUA2, Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +3

Query: 96  SARGRSLSGALQTSPGLSTRPKATSLH-TDILKILTTFKISS-VSWQKRLILWSRYELPA 269
           S++   LS ALQTSP ++      S H T   +   +F++S+ +S     ++ S  E P+
Sbjct: 438 SSKDTLLSAALQTSPSVNHENGIGSGHDTSAAEEFNSFELSAKLSGVMVDVVPSHMEKPS 497

Query: 270 DLKTQTAFSTKMVFADATSINNH 338
           D  + +    + V    T++N H
Sbjct: 498 DRMSPSVACVQTVGDRQTAVNFH 520


>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 57  PVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
           P +  TT SKL P     SLSG     P   + P+A S
Sbjct: 86  PHSFSTTPSKLKPPRTPSSLSGFYSPGPSFRSSPRAFS 123


>At1g19360.1 68414.m02409 expressed protein
          Length = 428

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 626 YNDRLTWGDGKDYTSHHVSWQLISLWE--DNNVIFKILNTEYEMYLKL 763
           +N+ L +    +YT+ H S +++ ++E  ++ V+FK +   +E+  K+
Sbjct: 341 FNEELFYPSHPEYTALHASKRVMDMYEFMNSKVLFKTVRKNHELKKKV 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,591
Number of Sequences: 28952
Number of extensions: 286876
Number of successful extensions: 958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)