Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00282
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 28 0.64
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.1
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 27 1.5
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.4
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 4.5
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 6.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 6.0
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 25 6.0
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 6.0
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 24 7.9
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 0.64
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 56 IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 223
+ C + F S R +Y H + + + VENLH ++ + ++ G +++G IL
Sbjct: 92 LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149
Query: 224 AFDKTYSTA 250
+FDKT+ TA
Sbjct: 150 SFDKTFDTA 158
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 199 EYGRYMRQAEMEVFNSLTEHFRAVLH 122
E G Y+ + +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYS 244
V ++N VY H+ SSK F+K ++ LH F + R G+ ++ +++
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSFT 390
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 116 HDVQYSSKMFRKRVENLHFSLP 181
+D+ ++S +FRKR + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 196 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 113
YGR M+ E + + +H+RAV ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 155 VENLHFSLPHVPSIFGRSIQGILA 226
++NL +SLP V SI S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 92 RWCRRKCDRIPRSPQRRVATQRFATSSWQ 6
RWC C R PQ + R+ +++Q
Sbjct: 743 RWCMLACSMYARDPQGALTPLRWVFTTFQ 771
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 142 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 47
H ++LH V+D + G+ S AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 6.0
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +2
Query: 116 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 208
H +++ K+ K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 143 FRKRVENLHFSLPHVPSIFGRSIQGILAFDKT 238
F R + H ++ H PS+FG+ I G L D T
Sbjct: 282 FPHRNAHQHNAIAHNPSVFGKPI-GDLTSDPT 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,888
Number of Sequences: 5004
Number of extensions: 32236
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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