Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00282
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    27   3.9  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    27   3.9  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    27   3.9  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   6.9  
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 120 TCSTARKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRPIALLLEHHP 266
           T    R  SV++   S      +L Y GGP    + S  PIA+ LE  P
Sbjct: 463 TTPILRPSSVQDYNRSQMGSQSHLSY-GGPLNTSYSSQAPIAIPLEPRP 510


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 120 TCSTARKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRPIALLLEHHP 266
           T    R  SV++   S      +L Y GGP    + S  PIA+ LE  P
Sbjct: 463 TTPILRPSSVQDYNRSQMGSQSHLSY-GGPLNTSYSSQAPIAIPLEPRP 510


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 120 TCSTARKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRPIALLLEHHP 266
           T    R  SV++   S      +L Y GGP    + S  PIA+ LE  P
Sbjct: 463 TTPILRPSSVQDYNRSQMGSQSHLSY-GGPLNTSYSSQAPIAIPLEPRP 510


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 56   IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 154
            ++E G   V   V + + Y +++ +  KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 77  FVGTSVNRPLVYHHDVQYSSK 139
           F  + +NR  VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239  RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 147
            R C R  CP W    W     S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239  RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 147
            R C R  CP W    W     S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 56  IVECGHTFVGTSVNRPLV 109
           I++ GH FVG  V+RP++
Sbjct: 71  ILDAGHMFVGVDVSRPML 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,431,163
Number of Sequences: 27780
Number of extensions: 192657
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)