Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00281
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 30 0.32
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.74
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 28 1.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 28 1.7
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 2.2
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.2
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 27 3.9
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 5.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.9
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 169 KGGEELLKKRLEITDKMPKELCDLREH 249
K G++L+K ITD+ PK L +++EH
Sbjct: 120 KDGDKLVKNTDSITDETPKVLSEIKEH 146
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.1 bits (62), Expect = 0.74
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 7 YNLKENLQED-DLQYLQLFTEYGKLL--KNEDGSKA--FQMLMFLIRDWPYYYEHAFGAK 171
++L N+ ED D L Y KLL K G+K F+ + FL +W + EH +
Sbjct: 530 WSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSGNKNLYFKEIDFLENEWAFLNEHIYWIN 589
Query: 172 GGE 180
GG+
Sbjct: 590 GGD 592
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 570 VSTRRSWMLRAIPTRQVCQVKEFVLLITKHWLKQSKRSTKKGKMGSQKEI 719
++ R ++ + Q+ + K + + H S S KKGK+ S+KE+
Sbjct: 68 IAKRSRKKIKPLKVDQILENKSSIEKVHSHLTNNSTESNKKGKIFSRKEL 117
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = +2
Query: 473 YDCFQQ*FYDNSSSIFENTKRAALMAAIREA-----TSKYTKIMDAACNTDTPSMPGEGV 637
+ FQQ NS S+F+N A + E+ K I + + NT +P P
Sbjct: 30 WPAFQQSHTFNSMSVFKNDNAIANQTTVNESDVKRNVEKINDIYECSNNTKSPCFPNSDS 89
Query: 638 RV 643
R+
Sbjct: 90 RI 91
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 455 YIFPNLYDCFQQ*FYDNSSSIFENTKRAALMAAIREATSKYTKIMDAACNTDTP 616
Y+ P L++C Q N++ N+ L AAI + T K T M A NT P
Sbjct: 879 YVAPLLFECMQFTSTTNANMFSNNSISVLLKAAILKPT-KLTHGMFDALNTMKP 931
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 79 LKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEELLKKRLEI 207
+ +E +K + L++ W + Y H K +E +KK+ EI
Sbjct: 1 MHDESRTKQISSIKALLKKWEHEYVHTNNCKPSKEDVKKQPEI 43
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 708 QKEIGAYL-TPLKRDLEDQYHV 770
Q+E G Y TP+ DL D YHV
Sbjct: 411 QEEFGEYYATPIVNDLADTYHV 432
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 252 SSCFDKVSCFLMPHPGFKVSNPSYNGNFSELSTEFRNAL--KELVP 383
SS FD V + +P + SNP + T++RN L +EL+P
Sbjct: 304 SSKFDIVEDDMDTNPSKRFSNPHTKHIMDLVRTQYRNVLRTRELIP 349
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 433 LTPFIFFIFKFSGANIDGTSSLRAFLNSVESSE 335
+ F+F F FSG DG S + ++SE
Sbjct: 7 IASFLFLCFAFSGVKADGCSEENGYYYCNQASE 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,945
Number of Sequences: 5004
Number of extensions: 62002
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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