Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00281
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 100 1e-21
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 31 1.0
SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076) 29 5.5
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.5
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 28 7.3
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 28 9.6
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062) 28 9.6
SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7) 28 9.6
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 100 bits (239), Expect = 1e-21
Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 CFDKVSCFLMPHPGFKVS-NPSYNGNFSELSTEFRNALKELVPSIFAPENLNIKKINGVK 434
CF+K+ CFLMPHPG +V+ NP+++G ++ EF+ L++L+PS+ APENL +K ING +
Sbjct: 186 CFEKIGCFLMPHPGLRVATNPTFDGRLVDIDDEFKENLRKLIPSLLAPENLELKGINGEE 245
Query: 435 VTCADMYTYFQTYMTAFNSDSMITP 509
VTC + YF+ YM F D + P
Sbjct: 246 VTCRGLLEYFKAYMKIFQGDELPQP 270
Score = 62.9 bits (146), Expect = 3e-10
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 QIYN-LKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGG 177
Q+ N +K L ++++ Q+ E +N++ K FQ L+FL+RDW + YE +G GG
Sbjct: 100 QVNNEIKPFLLNNEIKPFQVNNEIKPFQENKE-IKPFQRLLFLVRDWSFPYEANYGEAGG 158
Query: 178 EELLKKRLEITDKMPKELCDLREHIRLASIRFHVSLCLTPVSKFRIQATTETF 336
++L++RL+ T++ EL +R+HI+ + + L P R+ AT TF
Sbjct: 159 SQILERRLKTTERQHSELLQVRKHIKECFEK--IGCFLMPHPGLRV-ATNPTF 208
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 500 DNSSSIFENTKRAALMAAIREATSKYTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIEA 679
D SS+F+ + + + ATSK + +A T S+P E +R +A EA
Sbjct: 442 DTVSSLFD-ILTFGVFSNVLHATSKQDMEISSATEEKTHSVPAE-IRARGREAC----EA 495
Query: 680 FNKKRENGLTKRDRCIP 730
F + ENG TK DR +P
Sbjct: 496 FQEALENGQTK-DRRLP 511
>SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 620 MPGEGVRVTHNQALAKAIEAFNKKRENGLTKRDRCIPNSIKA*FRRSIP 766
MPG T Q + K + + +++G +K+ RC +KA +R +P
Sbjct: 349 MPGLTPSETELQTVCKLLSGIGQTQDDGNSKQSRCKDCELKASLKRLVP 397
>SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)
Length = 255
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 611 TPSMPGEGVRVTHNQALAKAIEAFNKKRENGLTKRDRC 724
T MP EGVRV + + +E + NGL K C
Sbjct: 64 TVYMPKEGVRVRKSYSREMKLEVIEWYKNNGLNKNKTC 101
>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 336 SELSTEFRNALKELVPSIFAPENLNIKKINGVKVTCADMYTYFQ 467
+ + ++F +E S+F E + K I VK TC ++Y Y++
Sbjct: 54 NSVKSQFTRDFRETFFSLFNEEESDKKYIFDVKRTCKEVYDYYR 97
>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 594
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 655 LVMSNTNSFTWHTWRVGIARSIHDLRVLTGSFPNSCHQCR 536
LV+ + WRV + H RV + FP C Q R
Sbjct: 191 LVLHKKTHLEYQEWRVRLKTLPHKCRVCSAGFPTLCKQRR 230
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 497 YDNSSSIFENTKRAALMAAIREATSKYTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIE 676
+D SIFE + +A +R+ S + I A C P EG+ +++ +
Sbjct: 952 FDGQKSIFEKRNNSRRLA-VRQGVSFHLYISTAPCGDGALFTPREGLNTDLSESKMEHKP 1010
Query: 677 AFNKK 691
AF K
Sbjct: 1011 AFTSK 1015
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 376 SSLRAFLNSVESSEKFPL*LGFETLKPG*GIRKHETLSKQDEYVP 242
S AFL S + P +T KP I HE+LS +D VP
Sbjct: 746 SCFPAFLKSTDKLINIPRKASVDTPKPQFDISWHESLSARDHDVP 790
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 554 IREATSKYTKIMDAACNTDTPSMPGEGVRVTHNQA-LAKAIEAFNKKRENGLTKRD 718
IR T Y + AA PS+ +G R N +A A+ F+ R +GLT+R+
Sbjct: 424 IRRWTHDYGWLRPAASRNPVPSIKAQGSRDRMNSGWVADAMRLFSVSR-SGLTERE 478
>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
Length = 485
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +3
Query: 222 KRAM*PPGTYSSCFDKVSCFLMPHPGFKVS-NPSYNGNFSELSTEFRNALKELVPSIFAP 398
KRA P Y++ C L FK+ PSYNG+ + +N P+ P
Sbjct: 240 KRAKRPCAYYTNSTATFHCLLEGDLIFKLDPGPSYNGSAEKDCATSKNKASRRAPAPVCP 299
Query: 399 ENLNIKKINGVKVTCA 446
K N + CA
Sbjct: 300 VCDKAVKCNQKRYVCA 315
>SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7)
Length = 320
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 512 CWSYHRITVESSHISLEICIHISACY-FNSIYLF 414
CW ++ E+ H+++++ +H+ Y FN+ + F
Sbjct: 211 CWDFNNDFKEAIHMAVDMLVHVFRSYCFNACFQF 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,814,486
Number of Sequences: 59808
Number of extensions: 444972
Number of successful extensions: 1233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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