Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00281
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74530.2 68414.m08635 expressed protein                             33   0.28 
At1g74530.1 68414.m08634 expressed protein                             33   0.28 
At3g20260.1 68416.m02566 expressed protein                             29   3.4  
At4g38830.1 68417.m05497 protein kinase family protein contains ...    28   5.9  

>At1g74530.2 68414.m08635 expressed protein 
          Length = 262

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 294 PGFKVSNPSYNGNFSELSTEFRNALKELVPSIFAPENLNIK 416
           P  KV+NP    N   LSTE+   + E+V ++F+P   N K
Sbjct: 100 PVLKVANPPVRANVLHLSTEYSVPVLEVVKNVFSPYFENSK 140


>At1g74530.1 68414.m08634 expressed protein 
          Length = 318

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 294 PGFKVSNPSYNGNFSELSTEFRNALKELVPSIFAPENLNIK 416
           P  KV+NP    N   LSTE+   + E+V ++F+P   N K
Sbjct: 100 PVLKVANPPVRANVLHLSTEYSVPVLEVVKNVFSPYFENSK 140


>At3g20260.1 68416.m02566 expressed protein
          Length = 437

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 240 PGTYSSCFDKVSCFLMPHPGFKVSNPSYNGNFSELSTEFRNALKELV--PSIFAPENLNI 413
           P  Y+        FL+    +  + P   G+ SEL    RNA+ +L+  P I   +   +
Sbjct: 232 PTCYNHTAQLFQQFLVLLQRYIENEPFEQGSRSELYARARNAMPKLLQAPKIQGSDKKEM 291

Query: 414 KKINGVKVTCADMYTYFQTYMTAFN 488
           +K  G  V   D+    ++ +  FN
Sbjct: 292 EKDTGFMVLADDLIKVIESSILTFN 316


>At4g38830.1 68417.m05497 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 665

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 649 MSNTNSFTWHTWRVGIARSIHD--LRVLTGSFPNSCHQCRPLGIL 521
           M +  SF W  W+ G+A ++ D  L  ++    N   +C  +G+L
Sbjct: 555 MGDLISFAWRNWKEGVALNLVDKILMTMSSYSSNMIMRCINIGLL 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,551
Number of Sequences: 28952
Number of extensions: 315987
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)