Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00280
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    30   0.30 
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    28   1.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.8  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   2.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   8.6  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 318 ISLDSSVPLATRASISATMADYWHQVVSNLPN 223
           I  ++S  +A + SIS +++D+WH V  N+ N
Sbjct: 330 IKTETSNYIACQGSISRSISDFWHMVWDNVEN 361


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTLR 511
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG ++
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 297 VRSCPMKYS*LWLQQFTIMKIIMKLH*KSFI 389
           +R+CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 511 QLAQAWLNLIQGG-PGIQDAHYSVMELS 591
           QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 163 QLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 323 LIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 433
           LI+    Y H   Y + ++ILHN E  +L  F  +CL
Sbjct: 214 LIMKQFSYSHHMGYISEIRILHN-EYEKLLKFVRECL 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,748
Number of Sequences: 5004
Number of extensions: 57236
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)