Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00280
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 64 1e-10
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 59 4e-09
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 32 0.42
07_01_0466 - 3518315-3521428 31 0.97
03_06_0191 - 32228642-32228949,32229028-32230567 30 1.7
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.7
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 29 2.9
03_03_0101 - 14431327-14432390,14432599-14432731 29 5.2
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 28 6.8
04_04_1191 + 31599067-31600194 28 6.8
04_04_0574 + 26338567-26338819,26338918-26338989,26339077-263391... 28 9.0
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +2
Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
SN + ++A I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQLK++Q
Sbjct: 100 SNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQ 159
Query: 488 IEDDGTL 508
I++D TL
Sbjct: 160 IDEDHTL 166
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +3
Query: 18 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 194
D LF+++N FY+G YQ AIN + V A +RDA ++RSY+A G+Y++V E+ +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63
Query: 195 ADPMLQPLKSLVDYLLPDANNLPLSLILMLEWL 293
A LQ +K L YL D + +++ + EWL
Sbjct: 64 AATSLQAVKLLALYLSGDKES---AIVSLKEWL 93
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +2
Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
SN I +VA T+ HE +Y ALK ++ ++EL A +Q L M+R D A KQL+++Q
Sbjct: 110 SNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQ 169
Query: 488 IEDDGTL 508
+++D TL
Sbjct: 170 LDEDHTL 176
Score = 54.4 bits (125), Expect = 9e-08
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Frame = +3
Query: 18 DELFDVKNAFYVGNYQQAINEAQSV---SPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL 188
D LF ++N+FYVG YQ I Q++ + +P +RD+ LYRSYIA G++++V E+
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 189 -KTADPMLQPLKSLVDYL 239
A LQ ++ L YL
Sbjct: 68 GPGAATPLQAVRLLTVYL 85
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 511 QLAQAWLNLIQGGPGIQDAHYSVMELSE 594
QLA AW++L+ GG IQ+AH +LSE
Sbjct: 178 QLANAWVDLVMGGSKIQEAHLIFQDLSE 205
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 32.3 bits (70), Expect = 0.42
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +2
Query: 332 AATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLR 511
A+++YY N E +L H+A LE A C +++P + RK L + +
Sbjct: 464 ASSVYYRVSNEEPSL---HSAVLLEQAA----CCYVLSKPPMLRKYGFHLVLAGNSYYIS 516
Query: 512 S*HKRG*I*FRAAL-VSKMHTTA*WSYLNVSVHWDLVRPPSVLGL 643
+ +R AL V K H WSY+N VH+++ R VLG+
Sbjct: 517 DQKQHAVRAYRNALFVYKQHP---WSYINDHVHFNVGRWYGVLGI 558
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -1
Query: 628 GRPDQVPMNRDVQIAPSRCSVHLGYQGRPELDSATLVLAAQSAIIFNVLQQLQLF 464
G P +V + DV++ PSR S + GR LD+ V + A+I+ L++ F
Sbjct: 74 GEPLEVAVLHDVRVGPSRRS---NFLGRVRLDARQFVRKGEEALIYFPLEKKGFF 125
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 287 VAKGTELSNEIFLIVAATIYYHEDNYEAALKILH----NAESLELRAFTLQCLLAMNRPD 454
V + TE+++ + + + + N++ AL +L N ES+ L+CL+ + D
Sbjct: 492 VVQDTEVASSVLTVFILALC-KQGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVD 550
Query: 455 LARKQLKLLQ 484
LA + +K ++
Sbjct: 551 LAIEHIKSIR 560
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 347 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 475
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 180 QELKTADPMLQPLKSLVDYLLPDANNLPLSL--ILMLEWLKVRSCP 311
+E + A +L L L + LP+ +LP L + LEWL V CP
Sbjct: 1301 EEQERALQLLASLHRLDFWHLPNLRSLPAGLRRLASLEWLDVEDCP 1346
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 315 SLDSSVPLATRASISATMADYWHQVVSNLP 226
SL SVP T A+ +AT W Q+ + LP
Sbjct: 101 SLSRSVPSLTMAAATATALARWSQIAAQLP 130
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 136 RNASRWSATRGVEGLTLCASLIA 68
R RW A GV GL LCA+ ++
Sbjct: 39 REQWRWEAVEGVRGLWLCAAFLS 61
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 180 QELKTADPMLQPLKSLVDYLLPDANNLPLSL--ILMLEWLKVRSCP 311
+E + A +L L+ L + LP+ +LP +L + LEWL + CP
Sbjct: 282 EEQERALQLLTSLERLNFWGLPNLLSLPANLASLTSLEWLDISDCP 327
>04_04_0574 +
26338567-26338819,26338918-26338989,26339077-26339135,
26339229-26339288,26339304-26339364,26339496-26339592,
26339684-26339750,26340123-26340311,26340404-26340639,
26340747-26340848,26340981-26341092
Length = 435
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 318 ISLDS-SVPLATRASISATMADYWHQVVSNLP 226
+++DS LA + ++ M YWHQ+ ++P
Sbjct: 231 LAIDSPKATLAVKRRLACEMVKYWHQIQESIP 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,028
Number of Sequences: 37544
Number of extensions: 403959
Number of successful extensions: 1004
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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