Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00280
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)            53   3e-07
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         30   2.3  
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_13848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)
          Length = 155

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 12  DVDELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELK 191
           DVDELFDVKNAF++GNYQ  INEAQ                       QG Y +V  E+ 
Sbjct: 6   DVDELFDVKNAFFIGNYQGCINEAQKF---------------------QGKYSVVMDEIS 44

Query: 192 -TADPMLQPLKSLVDYL 239
             + P +QP++ L DYL
Sbjct: 45  GMSPPEVQPVRVLADYL 61


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -2

Query: 315 SLDSSVPLATRASISATMADYWHQVVSNLPNSSMAVA*DLQSLVLVALSCSYP 157
           S+ +SVPL+  ASIS+     +  V +++P S++A    +Q+    ++  S P
Sbjct: 666 SIQASVPLSAVASISSVQGSDYPSVQASVPPSAVASVSSVQASDYPSIQASVP 718


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 350 HEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQ 469
           H D  EAAL +L    S E+R  TL+  L  N+ DL RK+
Sbjct: 211 HVDQEEAALPMLLQRHSAEMR--TLRERLKRNKQDLIRKE 248


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 530 SHACASCAKCHHLQCPAATSVVCVQGLV 447
           S ACA   +CH   C  + SV+ V  LV
Sbjct: 63  SCACACWQRCHSCACACSKSVILVHALV 90


>SB_13848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 637 QHRGRPDQVPMNRDVQIAPSRCSVH-LGYQGRPELDSATLVLAAQSAIIFNVLQ 479
           +H   P+  P NR V IAP  C +H   Y   PE     L   +   + F++ Q
Sbjct: 14  EHSIVPEIQPSNRVVDIAPELCKIHPQSYLKLPENCVTVLFRVSLQVMEFSLFQ 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,154,907
Number of Sequences: 59808
Number of extensions: 454374
Number of successful extensions: 1055
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)