Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00280
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 8.0
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 28 8.0
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 8.0
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 28 8.0
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 28 8.0
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 28 8.0
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.0
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.0
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +3
Query: 18 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 197
D+LF ++N F++G+YQ I EA S ++D +LYRSYIAQG I +E+ A
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +2
Query: 263 IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAM 442
I+A++ VA + +EI ++AATI D + A + + E LE RA + L+ M
Sbjct: 87 ILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQDAFRAVSRFEGLEARASKVFILIKM 145
Query: 443 NRPDLARKQLKLLQDIEDDGTL 508
N+ LA ++K + I++D TL
Sbjct: 146 NKRKLAIGEVKKMNQIDEDATL 167
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 353 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 448
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical
protein F08G5.2 protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 LKTADPMLQPLKSLVDYLL--PDANNLPLSLILMLEW 290
LK+ + PL+ LVD L PD N LPL+ I M W
Sbjct: 238 LKSNNGKGPPLEYLVDVTLGYPDGNILPLNEIFMSAW 274
>Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical
protein F11A3.1 protein.
Length = 544
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 628 GRPDQVPMNRDVQIAPSRCSVHLGYQGRPELDSATLV 518
G + P+N+ +I ++ LGY GRPE ++T++
Sbjct: 380 GTDREQPVNQRGEICVRGPTIMLGYLGRPEATASTVI 416
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 600 RFIGTWSGLPRCWGCSCQR 656
R + + G P C+GCSC R
Sbjct: 1540 RCLAGFYGFPHCYGCSCNR 1558
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 600 RFIGTWSGLPRCWGCSCQR 656
R + + G P C+GCSC R
Sbjct: 1540 RCLAGFYGFPHCYGCSCNR 1558
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 302 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 466
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 302 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 466
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
+ + + A +Y +E YE+ALKIL + + ++ + DL + Q+ L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469
Query: 488 IEDDGTLR 511
I + LR
Sbjct: 470 INSERALR 477
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
+ + + A +Y +E YE+ALKIL + + ++ + DL + Q+ L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469
Query: 488 IEDDGTLR 511
I + LR
Sbjct: 470 INSERALR 477
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
+ + + A +Y +E YE+ALKIL + + ++ + DL + Q+ L +
Sbjct: 462 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 517
Query: 488 IEDDGTLR 511
I + LR
Sbjct: 518 INSERALR 525
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 600 RFIGTWSGLPRCWGCSCQR 656
R + + G P C+GCSC R
Sbjct: 1540 RCLAGFYGFPHCYGCSCNR 1558
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 600 RFIGTWSGLPRCWGCSCQR 656
R + + G P C+GCSC R
Sbjct: 1540 RCLAGFYGFPHCYGCSCNR 1558
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,922
Number of Sequences: 27780
Number of extensions: 338406
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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