Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00280
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 279 SISATMADYWHQVVSNLP 226
           SI  T+ DY+H+   NLP
Sbjct: 419 SIYKTILDYYHKYKENLP 436


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 279 SISATMADYWHQVVSNLP 226
           SI  T+ DY+H+   NLP
Sbjct: 419 SIYKTILDYYHKYKENLP 436


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 279 SISATMADYWHQVVSNLP 226
           SI  T+ DY+H+   NLP
Sbjct: 45  SIYKTILDYYHKYKENLP 62


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 431 LLAMNRPDLARKQLKLLQDIEDD 499
           +L M   DL +KQLK L+D E++
Sbjct: 365 ILRMLIIDLRKKQLKSLEDWENE 387


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 596 VSVHWDLVRPPSV 634
           +SV WD+++ P+V
Sbjct: 198 ISVEWDIIKVPAV 210


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 416 MLLVPAIQHYEGFLMQLHNYLHDSKLLQPQSRI 318
           +L  P+I+ Y     Q   Y+HD+  +QPQ ++
Sbjct: 449 ILQQPSIRTYT---QQQFPYVHDTLQIQPQEQL 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,667
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)