Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00278
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.8  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   3.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.7  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 401 CGKHGHCL 378
           CG+HGHC+
Sbjct: 38  CGEHGHCV 45


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 405 WGNQRI*SSQVELTITC 455
           W NQ I  S+V+LT TC
Sbjct: 114 WMNQDISFSRVKLTNTC 130


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 390 WALLI-IFFRAVESLIIGEYIISKNI 316
           W +L  IF  A +SLI  + II KN+
Sbjct: 118 WIILCNIFEAAAKSLIYIDMIIKKNV 143


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 400 VVNMGIAYYILSGCGISNNRGVHYFKKYTPVYS 302
           V  + I  ++L    ++++   H F K+ P+YS
Sbjct: 397 VTVLEIEDWVLLKNKVTSDTRTHQFAKFMPLYS 429


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = +1

Query: 352 RFHSPKEYNKQCPCL--PHC 405
           R HSP+ Y  +CP +  P C
Sbjct: 22  RPHSPEPYPPRCPPIYEPSC 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,637
Number of Sequences: 336
Number of extensions: 3440
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)