Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00278
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    67   1e-11
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    67   1e-11
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805           63   2e-10
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657...    29   4.2  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           29   4.2  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    29   4.2  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   7.4  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    27   9.7  

>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 263 RIPFKVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGA 442
           ++PF++   + K A+ RG+  EI YSP+I D+ +R+  ++ A +     K KN+I++S A
Sbjct: 138 KLPFRLKLPMLKLALQRGLHLEIAYSPLIADAASRRQAVAEAKLLVEWTKGKNLIISSAA 197

Query: 443 DNHMHIRSVNDIINL-GFLLGLNTTRA 520
                IR   D INL  +LLGL+T RA
Sbjct: 198 HTASEIRGPYDAINLSSYLLGLSTQRA 224


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 263 RIPFKVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGA 442
           ++PF++   + K A+ RG+  EI YSP+I D+ +R+  ++ A +     K KN+I++S A
Sbjct: 138 KLPFRLKLPMLKLALQRGLHLEIAYSPLIADAASRRQAVAEAKLLVEWTKGKNLIISSAA 197

Query: 443 DNHMHIRSVNDIINL-GFLLGLNTTRA 520
                IR   D INL  +LLGL+T RA
Sbjct: 198 HTASEIRGPYDAINLSSYLLGLSTQRA 224


>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
          Length = 310

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +2

Query: 263 RIPFKVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGA 442
           ++ F++   + K A+ +G+  EI YSP+I D+ +R+  I+ A +     K KN+I++S A
Sbjct: 138 KLSFRLKLPMLKLALQKGLHLEIAYSPLIADAASRRQAIAEAKLLVEWTKGKNLIISSAA 197

Query: 443 DNHMHIRSVNDIINL-GFLLGLNTTRA 520
                IR   D INL  +LLGL+T RA
Sbjct: 198 HTASEIRGPYDAINLSSYLLGLSTQRA 224


>12_02_0776 -
           23064167-23064239,23065214-23065518,23065614-23065727,
           23065812-23065918,23065997-23066143,23066227-23066326,
           23066421-23066522,23066702-23066776,23066973-23067152,
           23067266-23067355,23067435-23067559,23067847-23067910,
           23067993-23068197,23068818-23068966
          Length = 611

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 519 ALVVLRPSRNPKFIISFTLRICM*LSAPLVRIIFFDFPTV 400
           AL +L PS  P  I+ F  ++ + + AP+V  +   FP +
Sbjct: 162 ALAILHPSLLPVAIVGFFTKLSVFIGAPIVGKLMDHFPRI 201


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 123 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 233
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 241 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 277


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 123 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 233
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 244 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 280


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 520 SSRCIEAKQKSQIYNIIYTTDMHVIVSSTCED 425
           ++ C+E  Q+S I+ + Y+TD  +++    ED
Sbjct: 298 NANCLETLQQSLIHKLKYSTDFLLVLDDVWED 329


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 565 QFSKSIFVYCCVQLLSSRCIEAKQKSQIYNIIY 467
           +F K+ F YCC+  L      AKQ   I   +Y
Sbjct: 436 RFIKAFFFYCCIVFLIYMLTSAKQTFSIRGHLY 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,955
Number of Sequences: 37544
Number of extensions: 291528
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)