Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00278
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3641| Best HMM Match : RNase_P_p30 (HMM E-Value=0.0012) 57 1e-08
SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1) 31 0.81
SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36489| Best HMM Match : WTF (HMM E-Value=1.2) 29 4.3
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 29 4.3
SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082) 29 4.3
SB_54253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_3745| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_3641| Best HMM Match : RNase_P_p30 (HMM E-Value=0.0012)
Length = 168
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +3
Query: 84 LNILQRITIEFSDSGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMDIDIISFELKE 263
L +L R+T+ ++G +H+L S+ + KYD++AV P T + F ACSS+++D+IS +L
Sbjct: 74 LQVLNRVTVPLEENGQLHQL-ASDTLHKYDLLAVNPATDKLFLQACSSLEVDLISLDLTA 132
Query: 264 EYP 272
P
Sbjct: 133 RLP 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 263 RIPFKVHRKLYKQAVDRGIFFEIMYSPIIRDSTAR 367
R+PF + +QA+DRG+ FEI Y P+IRD+T R
Sbjct: 133 RLPFYLKMPQVRQAIDRGVSFEITYGPMIRDNTQR 167
>SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)
Length = 332
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 275 KVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNH 451
K+ RKLYKQ + F +I IR+ +K I ++ +T K ++ + S D H
Sbjct: 123 KLKRKLYKQRKRQEKFKKIEKKKAIREQKQQKAAIQRYNLRNTTRKCEDDSMASAPDQH 181
>SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +3
Query: 102 ITIEFSDSGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMDIDIISFELKEEYPLKY 281
+T E D+ V+KL ++ N Y I V+ + AF + C + + L + +KY
Sbjct: 169 VTFEMPDARDVNKLVQATN---YFIYKVVATAVDAFMFRCDANESYFTDPNLYRQRWVKY 225
Query: 282 IVNFINKL*TGVYFLK*CTPLLLEIPQP 365
+ +K ++F +L +P P
Sbjct: 226 FDHVKSKATDAIWFGSKLLSTVLRVPPP 253
>SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)
Length = 1007
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 323 FEIMYSPIIRDSTARKNIISNAHV--YHTVGKSKNIILTSGADNHMHIRSVNDIINLGFL 496
+EI+ + II+D+T+++ ++ H+ Y K+ GA H H S IN G +
Sbjct: 242 YEIILNSIIKDTTSKERTVALLHILAYFRSQKTSQFNKDVGAFLHHHGAS-RSAINTGPV 300
Query: 497 LG 502
LG
Sbjct: 301 LG 302
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 490 ISAWPQYNESLEVVRNNTRRLILKTEGRKCGKHYMSFSPIENKINE 627
I A Y E E+ + + RL+L+ E GK + P+E+KI E
Sbjct: 895 IQAKLSYKEGSEISKMSRERLVLQIEQDFLGKLEKAKVPLEDKIRE 940
>SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)
Length = 363
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 490 ISAWPQYNESLEVVRNNTRRLILKTEGRKCGKHYMSFSPIENKINE 627
I A Y E E+ + + RL+L+ E GK + P+E+KI E
Sbjct: 175 IQAKLSYKEGSEISKMSRERLVLQIEQDFLGKLEKAKVPLEDKIRE 220
>SB_54253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 175 ISYFFIFSERFNL*TIPESENSIVILCSMLSFV*KLLSFGKS 50
++Y I ERF P IV CS L V KL F S
Sbjct: 11 LNYHAIVFERFRFRPSPRHRKGIVFNCSTLEIVFKLFRFRSS 52
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 6 KGDTREIKDFVPPPMDLPKDNNFQ 77
K D+R +KD PPP+ ++N F+
Sbjct: 553 KKDSRRLKDSSPPPLTSSQENKFR 576
>SB_3745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 329 IMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNHMHIRSVNDIINLGFLL 499
I+Y+ ++R S ++ IS+ HV + V + + + +RS D++ LG LL
Sbjct: 178 ILYNKVLRMSQSKLAKISSGHVINLVSNDIQRLDLATQNLFASLRSPFDLVVLGVLL 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,057
Number of Sequences: 59808
Number of extensions: 376114
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -