Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00278
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical ...    53   2e-07
AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical ...    53   2e-07
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical
           protein H35B03.2b protein.
          Length = 179

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 43/72 (59%)
 Frame = +2

Query: 314 GIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNHMHIRSVNDIINLGF 493
           G+F+EI Y+  +  +T RKN + N  V     KSKNII +SGA+  + +RS  D++N+  
Sbjct: 8   GVFYEIAYAESLMPAT-RKNTLFNGRVLIRSLKSKNIIFSSGAETMLDLRSPVDVMNMSL 66

Query: 494 LLGLNTTRA*KL 529
           L G+    A K+
Sbjct: 67  LWGVANNEARKM 78


>AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical
           protein H35B03.2a protein.
          Length = 393

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 43/72 (59%)
 Frame = +2

Query: 314 GIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNHMHIRSVNDIINLGF 493
           G+F+EI Y+  +  +T RKN + N  V     KSKNII +SGA+  + +RS  D++N+  
Sbjct: 222 GVFYEIAYAESLMPAT-RKNTLFNGRVLIRSLKSKNIIFSSGAETMLDLRSPVDVMNMSL 280

Query: 494 LLGLNTTRA*KL 529
           L G+    A K+
Sbjct: 281 LWGVANNEARKM 292



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +3

Query: 27  KDFVPPP--MDLPKDNNFQTK-----LNILQRITIEFSDSGIVHKLNRSENIKKYDIIAV 185
           K  +PPP  +D+ + N  + +          RIT   ++  +++K+     I  YDI+AV
Sbjct: 116 KKLIPPPHYVDVSQLNTSELEKRGKVFRQFSRITFTANEQVVINKVFIHPTILSYDIVAV 175

Query: 186 IPKTLQAFQYACSSMDI-DIISFELKEEYPLKYI 284
            P             ++ DII+ +  EE   K++
Sbjct: 176 RPGEPSVLDTLSRKTELFDIITIDHLEEERRKWL 209


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = +3

Query: 3   KKGDTREIKDFVPPP-MDLPKDNNFQTKLNILQR-ITIEFSDSGIVHKLNRSENIKKYDI 176
           +  D     +F+P   ++L K N+F TKL  L R  TI   +    HK  +   + K  I
Sbjct: 10  RSNDRLPSPNFLPEDFLELLKSNDFDTKLTTLIRAATIAKREEDWFHKFQKKGELFKC-I 68

Query: 177 IAVIPKTLQAFQYACSSMDIDII-SFELKEEYPLKYIV-NFINKL 305
             +I       Q+ C    ++ + +F    EY + +++ N I KL
Sbjct: 69  DKIICDDRWELQHQCIKFLVEAMPTFGSATEYCMCFVMPNLIPKL 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,160
Number of Sequences: 27780
Number of extensions: 298395
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)