Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00278
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    26   0.27 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 PCLPHCGEIKEYNPHKWS 441
           PCLPH    ++ N  KWS
Sbjct: 106 PCLPHRNSDRDLNIRKWS 123


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 392 VYHTVGKSKNIILTSGADNHMHIRSVNDII 481
           V+  VG    ++L + ADN +HI S   +I
Sbjct: 6   VFLAVGLFGVLLLLTNADNSVHILSKYQLI 35


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 174 YHIFLYFQSDLIYERF 127
           Y IFLYF S + + RF
Sbjct: 21  YFIFLYFNSLVRFRRF 36


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 305 QLVYKVYDVL*RVFFLQFETNNIDIHRTTSILKCL*CFWYNSY 177
           QL+  + +VL  V  L  ETN + +  T    K L   +Y  Y
Sbjct: 367 QLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEY 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,127
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)