Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00278
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont...    79   3e-15
At4g01995.1 68417.m00267 expressed protein                             28   4.7  
At2g32900.1 68415.m04033 centromere/kinetochore protein, putativ...    28   4.7  
At3g01870.1 68416.m00132 hypothetical protein                          28   6.1  

>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
           contains Pfam PF01876: RNase P subunit p30
          Length = 581

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/83 (44%), Positives = 55/83 (66%)
 Frame = +2

Query: 272 FKVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNH 451
           F++   + K A+ RGI+FEI YS I+ D+  R+ +ISNA +     + KN+I++SGA + 
Sbjct: 159 FRLKHPMVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSV 218

Query: 452 MHIRSVNDIINLGFLLGLNTTRA 520
             +R  ND+INL FLLGL+  RA
Sbjct: 219 TELRGPNDVINLMFLLGLSAERA 241



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 99  RITIEFSDSGIVHKLNRSENI-KKYDIIAVIPKTLQAFQYACSSMDIDIISFELKEE 266
           R+T+    +     LN    I K YDIIAV P    AF YAC   ++D+IS +  ++
Sbjct: 100 RLTVHVESNAQCQSLNSGNPILKSYDIIAVRPMNQNAFDYACEKAEVDLISIDFTDK 156


>At4g01995.1 68417.m00267 expressed protein
          Length = 258

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 24  IKDFVPPPMDLPKDNNFQTKLNILQRITIEFSDSGIV 134
           I+  +PPP  +   N+F TKL + +R+    S+S  V
Sbjct: 5   IQVLLPPPTTIVFSNSFSTKLILTRRLRCRISNSSEV 41


>At2g32900.1 68415.m04033 centromere/kinetochore protein, putative
           (ZW10) identical to centromere/kinetochore protein zw10
           homolog SP:O48626 from [Arabidopsis thaliana]
          Length = 742

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 535 CVQLLSSRCIEAKQKSQIYNIIYTTDMHVIVSS 437
           C+   S RC+ ++  SQ+ N+++ T   V VSS
Sbjct: 433 CLLFSSERCVVSEAASQLMNLVHKTLEDVCVSS 465


>At3g01870.1 68416.m00132 hypothetical protein
          Length = 583

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 388 GIAYYILSGCGISNNRGVHYFKKYTPV 308
           G+AY +++G GI     ++YF+K+ P+
Sbjct: 503 GVAYELVAGPGIQEPPWLNYFRKWGPL 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,968
Number of Sequences: 28952
Number of extensions: 265515
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)