Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00277
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 86 4e-18
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 39 9e-04
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 37 0.003
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 35 0.011
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 34 0.025
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 33 0.033
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 32 0.077
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 31 0.13
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 31 0.24
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 31 0.24
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 30 0.41
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 29 0.54
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 29 0.72
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 29 0.95
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 29 0.95
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 28 1.7
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 27 2.2
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.9
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 3.8
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 3.8
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 27 3.8
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 26 5.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 5.1
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.7
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 25 8.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.9
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 86.2 bits (204), Expect = 4e-18
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +2
Query: 224 QADRRRPALQGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 403
+A R +GI + F R E+G++S WRGN ANV+RYFPTQALNFAFKDK+K++F G
Sbjct: 63 RAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GY 121
Query: 404 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFA 508
++ + ++F SL FVY LD+A
Sbjct: 122 KKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYA 156
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = +1
Query: 511 TRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
TRLA D K G+R+F+GL + K ++SDGL GLYRGFG SV GI++YR YFG YD
Sbjct: 158 TRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYD 217
Query: 685 TAR 693
T +
Sbjct: 218 TLK 220
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3
Query: 144 GISAAVSKTAVAPIERVKLLLQVQ 215
G+SAAVSKTA APIERVKLL+Q Q
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQ 58
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 556 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 735
+ G+G C + +G+I L+RG +V +A F F D + M K
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMFGYKKERDGYAK 130
Query: 736 W 738
W
Sbjct: 131 W 131
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 254 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 403
G+VD + + + GL +RG +V+ + L F D K V L G
Sbjct: 177 GLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLVG 226
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 38.7 bits (86), Expect = 9e-04
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 553 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 702
+++G +C +KI K + ++ LY GF ++ +++ A YFG R L
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSL 189
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 511 TRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 624
TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 34 TRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 218 RQQADRRRPALQGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 394
R Q + G D +I K +G +RG ++ P +AL FA D Y +++
Sbjct: 35 RMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/25 (56%), Positives = 23/25 (92%)
Frame = +3
Query: 144 GISAAVSKTAVAPIERVKLLLQVQH 218
G++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN 52
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 257 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 388
+ V+I +GL+ F+RGN N +R FP A+ FA + KQ
Sbjct: 59 LTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 550 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
+E++ L + + KI+ +GLIG +RG G + Y A F ++
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFN 98
Score = 29.9 bits (64), Expect = 0.41
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 556 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 708
+ + + I I+K++G+ G +RG+ ++ II + + Y+T ML D
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITWYTYETVSKMLHD 316
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 547 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR-----GMLPDP 711
+R + +G S I + +G+ GL RG G + I GFY+ R L DP
Sbjct: 64 KRIYKSVGQAFSLIARHEGIRGLQRGLGTAYVYQICLNGCRLGFYEPIRRTLNTWFLDDP 123
Query: 712 KNTPIVISWAS 744
K + I+ AS
Sbjct: 124 KGNKLAINVAS 134
Score = 29.1 bits (62), Expect = 0.72
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 NCISKIFKSDGLIGLYRGFGVSVQGI 648
+CI K +S+G LY+GFG + I
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI 296
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 562 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
G+ + + ++KS+GL+GL+RGFG + + F FY+
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFGPRIFWTSSQSSLMFVFYE 323
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 144 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRY 251
G + V+K+ VAP++RVK+L Q H S + A R+
Sbjct: 25 GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH 60
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 604 LIGLYRGFGVSVQGIIIYRASYFGFYDTA 690
+ YRGF V++ GI Y F YD A
Sbjct: 184 ICNFYRGFSVTLTGIFPYAGMSFLAYDLA 212
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 32.3 bits (70), Expect = 0.077
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 493 PPRLRSTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 648
P L TRL D G + S + +CI K + +G GLY+G S+ G+
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLLGV 232
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 556 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 693
F + +C K++GL GLYRG + + + R+ F YD+ +
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYDSLK 95
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 556 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 693
++ + + I I+K +G+ G +RGFGV+ + Y FY+ ++
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYELSK 186
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 571 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVI 732
N IS + +S+GL G YRG+ + V + S++ Y+ ++ L N I +
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGVAIYLPTTVSWWVCYEESKKYLQKQSNWDISV 174
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 257 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 349
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 242 PALQGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQ 421
PA DAF +I K +GL +F+RG F ++ + F + +K KK+
Sbjct: 228 PAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGKKSN 286
Query: 422 F 424
F
Sbjct: 287 F 287
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +2
Query: 179 THRACQAAAPSTARQQADRRRPALQGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 358
T + Q A ST + L G + + I +G+ +RG ++ Y P+ ++
Sbjct: 31 TRKQAQKAFYSTG---GGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSI 87
Query: 359 NFAFKDKYKQVFLGGVDKK 415
F +K K +F GV+KK
Sbjct: 88 YFVVYEKCKVLF--GVNKK 104
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 583 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 708
KI+K +GL YRG S+ G ++ F Y+ + L D
Sbjct: 239 KIYKYEGLAAFYRGLFPSLFG-TLHVGIQFPLYEYFKSFLDD 279
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 547 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY-DTARGML 702
Q G+ I I+K++G+ GLYRG V G+ Y+ F D RG L
Sbjct: 240 QHSSPGIMQTIMSIYKNNGIKGLYRG-AVPRMGLGAYQTFVMVFLADCVRGYL 291
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 544 GQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
GQ S + + +++KS G+ G YRG V + G+ Y A+ G ++
Sbjct: 264 GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFE 310
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.95
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Frame = +2
Query: 215 ARQQADRRRP-------ALQGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP---TQALNF 364
+R Q DR R A++ + D + G + FW G F + + F AL
Sbjct: 193 SRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHLADALCL 252
Query: 365 AFKDKYKQVFLGGVDKKT 418
VF G+D+KT
Sbjct: 253 GVSANGDMVFSSGIDRKT 270
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.7 bits (61), Expect = 0.95
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = -2
Query: 611 PIRPSDLKILLMQFPRPENSRWPSPLPTSAARRVLRSRGGTRSTERWLRRHHRRPDYQRS 432
P + S+L I + P P + SP PT +R +RS G RS+ R R Y S
Sbjct: 514 PSKSSNLSINIDIPPSPLQNTVISPQPTRRSRTPIRSLSG-RSSVASSRNSSRTRSY--S 570
Query: 431 NARTASS 411
N +ASS
Sbjct: 571 NVSSASS 577
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 562 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDP 711
G G ++I+K G GL+ G GV + I + + YD+ + M P
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRIVMIGTLTGAQWLIYDSFKIMCGFP 307
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 577 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 702
+ +I+K +G+ G +G G+ V + + Y G Y+ + L
Sbjct: 206 VRRIYKENGIFGFEKGLGLRVFASSLGLSIYLGTYEHVKSHL 247
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 557 NSRWPSPLPTSAARRVLRSRGGTRSTERW 471
N +WP +P ++ VL + R T+RW
Sbjct: 46 NPKWPQCIPITSVPYVLLIQRSFRDTDRW 74
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 7 WDKRVILDQWGSLDCQARWGSKEKKVYEEIR 99
W LD W L QA W S+EK V E++
Sbjct: 431 WSYVHSLDFWARLLSQAAWLSREKGVASELQ 461
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 571 NCISKIFKSDGLIGLYRGFGVSVQGI 648
+C+ KI K++GL Y+G + + GI
Sbjct: 60 DCVKKISKNEGLAAFYKGTVLPLLGI 85
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +1
Query: 550 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 702
R++ +C + +F+++GL Y + + I + A YDT L
Sbjct: 146 RKYKSALHCATTVFRNEGLGAFYISYPTCIAMSIPFTAIQVATYDTCMSFL 196
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 550 REFSG-LGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPI 726
R SG + N + KI ++G+ L+RG + G A YF + + + + P+
Sbjct: 55 RSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAIYFSVLEFFKSKINASPDRPL 114
Query: 727 VISWA 741
+ A
Sbjct: 115 ASALA 119
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 13 KRVILDQWGSLDCQARWGSKEKKVYEEIR 99
K VILD G+L C+A EK VYE R
Sbjct: 24 KLVILDLNGTLLCRALAVRSEKSVYEASR 52
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.1
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Frame = -2
Query: 569 PRPE-NSRWPSP---LPTSAARRVLRSRGGTRSTERWLRRH------HRRPDYQRSNART 420
PR + SR PSP + + +R +RSR RS+ RH HR DY RS +
Sbjct: 122 PRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYS 181
Query: 419 ASSCQHRR 396
+ + RR
Sbjct: 182 SRHSRSRR 189
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 DKRVILDQWGSL-DCQARWGSKEKKVYEEIRVKGDVK 117
D RV D W + + + R+G+ E+ V E +R+K V+
Sbjct: 692 DPRVETDYWKAWQEFEIRYGNPEETVKEMLRIKRSVQ 728
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 694 GMLPDPKNTPIV 729
GMLPDPK+ P++
Sbjct: 89 GMLPDPKSIPVI 100
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WSAAICLLTCCTWSSSLTRSMGATAV 167
WSA I +LT C SLT S+ T +
Sbjct: 543 WSADIIMLTYCQDGISLTHSLKLTDI 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,569
Number of Sequences: 5004
Number of extensions: 55697
Number of successful extensions: 212
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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