Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00277
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   145   5e-37
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   145   5e-37
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  145 bits (351), Expect = 5e-37
 Identities = 63/76 (82%), Positives = 71/76 (93%)
 Frame = +1

Query: 511 TRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTA 690
           TRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTA
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 691 RGMLPDPKNTPIVISW 738
           RGMLPDPK TP +ISW
Sbjct: 201 RGMLPDPKKTPFLISW 216



 Score =  143 bits (346), Expect = 2e-36
 Identities = 65/86 (75%), Positives = 69/86 (80%)
 Frame = +2

Query: 251 QGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 430
           +G++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 431 YFXXXXXXXXXXXXTSLCFVYPLDFA 508
           YF            TSLCFVYPLDFA
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFA 139



 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 29/37 (78%), Positives = 35/37 (94%)
 Frame = +3

Query: 144 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYK 254
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYK
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYK 54



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 547 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  145 bits (351), Expect = 5e-37
 Identities = 63/76 (82%), Positives = 71/76 (93%)
 Frame = +1

Query: 511 TRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTA 690
           TRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTA
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 691 RGMLPDPKNTPIVISW 738
           RGMLPDPK TP +ISW
Sbjct: 201 RGMLPDPKKTPFLISW 216



 Score =  143 bits (346), Expect = 2e-36
 Identities = 65/86 (75%), Positives = 69/86 (80%)
 Frame = +2

Query: 251 QGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 430
           +G++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 431 YFXXXXXXXXXXXXTSLCFVYPLDFA 508
           YF            TSLCFVYPLDFA
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFA 139



 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 29/37 (78%), Positives = 35/37 (94%)
 Frame = +3

Query: 144 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYK 254
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYK
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYK 54



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 547 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 684
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 286 LGDTDEGIDDTL*RWSAAICLLTCCT 209
           +GD D   D+ +  WSA +     CT
Sbjct: 121 IGDHDVDKDELITGWSAVVITAAICT 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,470
Number of Sequences: 438
Number of extensions: 4564
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)