Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00276
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom...    26   5.0  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    26   5.0  

>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 199 RSVSEGVVCIFCLSSDKRRLIGRYRKIVIVV 107
           RS+ + +  +F    DKR L+  Y ++VIVV
Sbjct: 99  RSIRDALELLFKYVPDKRTLLENYDQLVIVV 129


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 296 FREAVHFFARMFGANPNRSLINIVVFLDEM 207
           F +A  FF  +FG  P R  +  + F+ EM
Sbjct: 84  FTDAYDFFTNLFGGAPFREWVGELSFVKEM 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,529
Number of Sequences: 5004
Number of extensions: 62235
Number of successful extensions: 167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)