Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00276
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0181 - 5425833-5426527,5426667-5429397                           29   3.0  
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156           29   3.9  
07_03_1440 + 26561985-26563019                                         29   5.2  
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    28   6.9  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    28   6.9  

>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 279 LLCTNVWREPKPLVDQYRRLFGRDVVPEAFP 187
           L CTNVWR P+ ++   + L   D+ P+  P
Sbjct: 610 LSCTNVWRIPEDVISSLKALQVIDLTPKPKP 640


>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
          Length = 598

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 150 LSLDRQNIQTTPSETLLGLHLVQKDDDID---QRAVWVRAKHSCKEVH 284
           +SL R  +    S+  L +H +  DDDID     AV  RA+H+ + VH
Sbjct: 483 ISLYRGKLYALTSKEELLVHGIINDDDIDTVSANAVLSRAEHAIRAVH 530


>07_03_1440 + 26561985-26563019
          Length = 344

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +2

Query: 479 SSRGNSLSPPHLTAGGIPAVDSANTALARA-----SVSNVVRLEPRELT*LL 619
           +++   L+PP+LT  G   +D A  AL  A     S ++VV    R+ T LL
Sbjct: 101 NTQPEKLAPPNLTLRGFEVIDEAKAALEAACPGDVSCADVVAFAARDATVLL 152


>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 506 PHLTAGGIPAVDSANTALARASVSNVVRL 592
           PHLT   +PA+ + + ALAR  +++ +R+
Sbjct: 129 PHLTQQLVPAMRNVHAALARLGLADAIRV 157


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 149 LIAG*AKYTNDSFGNASGTTSRPKRRRY*STSGLGSRQTFVQRSALPH 292
           L AG A   N+  GNA+ T+ +       ST GLGS       S LPH
Sbjct: 538 LYAGGASRGNNERGNATSTSGQNSSLP--STGGLGSSSFGTLESILPH 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,122
Number of Sequences: 37544
Number of extensions: 398156
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)