Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00276
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    36   0.031
Z81077-15|CAN99680.1|  664|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z81077-14|CAN99679.1|  662|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81077-1|CAB03066.2|  658|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    29   2.7  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    29   2.7  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    28   6.2  
AF106582-5|AAC78216.1|  327|Caenorhabditis elegans F-box a prote...    28   6.2  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 35/52 (67%)
 Frame = +3

Query: 345 LFFDIAKAFDKVWHNGLIYKLYNMGVSD*LVLIIRDFLSNRSFPYRVEGTRS 500
           ++ D +KAFD++ H+ L+ KL ++  +  L++ + +FLSNRSF  R+  T S
Sbjct: 17  IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLS 68


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 363 KAFDKVWHNGLIYKLYNMGVSD*LVLIIRDFLSNRSFPYRV 485
           KAFD+V H+ L+ KL++ G++        DFLS+R+F  +V
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKV 42


>Z81077-15|CAN99680.1|  664|Caenorhabditis elegans Hypothetical
           protein F36A2.1d protein.
          Length = 664

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 YIEIKEHFIFQPSVPHPGFEETFEAYDDSVVCPQV 1
           Y +I++  I Q + P  G++ TFE     +V PQ+
Sbjct: 502 YEQIRDPRILQQAAPQQGYQATFEVQKPQLVSPQI 536


>Z81077-14|CAN99679.1|  662|Caenorhabditis elegans Hypothetical
           protein F36A2.1c protein.
          Length = 662

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 YIEIKEHFIFQPSVPHPGFEETFEAYDDSVVCPQV 1
           Y +I++  I Q + P  G++ TFE     +V PQ+
Sbjct: 500 YEQIRDPRILQQAAPQQGYQATFEVQKPQLVSPQI 534


>Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical
           protein F36A2.1b protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 YIEIKEHFIFQPSVPHPGFEETFEAYDDSVVCPQV 1
           Y +I++  I Q + P  G++ TFE     +V PQ+
Sbjct: 494 YEQIRDPRILQQAAPQQGYQATFEVQKPQLVSPQI 528


>Z81077-1|CAB03066.2|  658|Caenorhabditis elegans Hypothetical
           protein F36A2.1a protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 YIEIKEHFIFQPSVPHPGFEETFEAYDDSVVCPQV 1
           Y +I++  I Q + P  G++ TFE     +V PQ+
Sbjct: 496 YEQIRDPRILQQAAPQQGYQATFEVQKPQLVSPQI 530


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 306 IELNKRKLIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVSD*LVLIIRDFLSN 464
           +E+ +   IP   +F D  KAFD V H  +   L   G     + ++++   N
Sbjct: 676 LEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKN 728


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 306 IELNKRKLIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVSD*LVLIIRDFLSN 464
           +E+ +   IP   +F D  KAFD V H  +   L   G     + ++++   N
Sbjct: 415 LEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKN 467


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 306 IELNKRKLIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVSD*LVLIIRDFLSN 464
           +E+ +   IP   +F D  KAFD V H  +   L   G     + ++++   N
Sbjct: 505 LEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKN 557


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 24/101 (23%)
 Frame = -1

Query: 589 PDDIANTSPSKSSVRRIYRRNASGRQ---MRG--------RERVPST------------R 479
           P D +N +P++ S R++ R  A+GR+   M G        RE +P T            R
Sbjct: 3   PTDTSNFAPAEISKRKVRRVKANGRERARMHGLNNALDMLREYIPITTQHQKLSKIETLR 62

Query: 478 YGNERFDKKSRMMSTSQSDTPMLYSL*I-KPLCQTLSNAFA 359
                 D   RM+ T++  TP+ Y+  +   L QT +N  A
Sbjct: 63  LARNYIDALQRMLQTNEQPTPLEYAHTLANGLSQTTTNMLA 103


>AF106582-5|AAC78216.1|  327|Caenorhabditis elegans F-box a protein
           protein 203 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 RFDKKSRMMSTSQSDTPMLYSL*IKP 389
           RF +KSR  S  Q + P +YSL I P
Sbjct: 15  RFHEKSRYSSYQQKNDPWMYSLRISP 40


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 737 RSFWAYRTH*ST-WTILSG*VRFFFLPILVASR--SYTRFTERVV 612
           +S W+  T     WT L G V FFFL     +R  ++ +F E+VV
Sbjct: 192 KSIWSLHTETGNIWTHLIGCVAFFFLACWFLTRPDNHIQFQEKVV 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,863
Number of Sequences: 27780
Number of extensions: 347712
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)