Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00276
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28150.1 68416.m03514 expressed protein                             29   3.3  
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam...    28   7.6  

>At3g28150.1 68416.m03514 expressed protein
          Length = 414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +3

Query: 195 LLGLHLVQKD---DDIDQRAVWVRAKHSCKEVHCLTEHI*IELNKRKLIPTGTLFFDI-A 362
           LL +    KD   D  D+  +W   KH        T+ +  E  +R    TGT  FD+  
Sbjct: 157 LLSMEETPKDIYKDGEDRNRIWYFPKHDFTLSTSWTKFLVEERERRDSNNTGTGLFDLDI 216

Query: 363 KAFDKVWHNGL 395
              D+ W NGL
Sbjct: 217 GKIDEGWFNGL 227


>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
           protein similar to dTDP-glucose 4,6-dehydratase from
           Aneurinibacillus thermoaerophilus GI:16357461,
           Saccharopolyspora spinosa GI:15077647, RmlB from
           Leptospira borgpetersenii GI:4234803; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 664

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 354 DIAKAFDKVWHNGLIYKLYNMGVS 425
           D+A+AF+ V H G +  +YN+G +
Sbjct: 230 DVAEAFEVVLHKGEVNHVYNIGTT 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,760
Number of Sequences: 28952
Number of extensions: 321168
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)