Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00275
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         125   5e-30
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   118   6e-28
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   2.0  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   3.5  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   3.5  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    26   4.6  
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm...    25   8.1  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  125 bits (302), Expect = 5e-30
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +1

Query: 1   AKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCK 180
           AKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C 
Sbjct: 2   AKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCG 61

Query: 181 RTVAGGAWVFSTTAASSCRSAVRR 252
           +  AGGA+  +T +A + RS +RR
Sbjct: 62  KVKAGGAYTMNTASAVTVRSTIRR 85


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  118 bits (285), Expect = 6e-28
 Identities = 52/83 (62%), Positives = 62/83 (74%)
 Frame = +1

Query: 4   KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 183
           KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C +
Sbjct: 3   KRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGK 62

Query: 184 TVAGGAWVFSTTAASSCRSAVRR 252
             AGGA+  +T +A + RS +RR
Sbjct: 63  VKAGGAYTMNTASAVTVRSTIRR 85


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 28  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 123
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 203 QAPPATVLLHRLQDQMPTQERF 138
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 203 QAPPATVLLHRLQDQMPTQERF 138
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 100 AKYTCSFCGKDAMKRSCV--GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRFV 258
           A   CS    D + +S +   + S  +   ++  G W F  T+ +S RS++ RF+
Sbjct: 296 APLLCSLRINDNVSKSFIVNNLGSNDKLDLSILFGLWHFDETSVTSMRSSIDRFL 350


>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
           to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
           finger) (2 copies)
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 212 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 84
           E  Q  P  +   + ++Q     RF+ S+P N    F  W++S
Sbjct: 177 EQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISS 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,239,024
Number of Sequences: 28952
Number of extensions: 117086
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)