Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00274X
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 101 1e-22
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 101 1e-22
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 29 0.62
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 0.82
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.4
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 27 2.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 2.5
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 26 3.3
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 4.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.4
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 5.8
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 5.8
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 5.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.7
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 101 bits (241), Expect = 1e-22
Identities = 49/83 (59%), Positives = 62/83 (74%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
RL +PK++VAAL T+ ARARIL AGGE+LT DQLA RAPTG TVL++G+++AREA R
Sbjct: 93 RLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYR 152
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG P H PYVR++G +
Sbjct: 153 HFG---FGPHKHKAPYVRSEGRK 172
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 181 RLA--RHMKXPTREGLIAVVVGTVTNE 255
++A K + EG V+VGTVT++
Sbjct: 65 KIAALTSRKSASLEGKTTVIVGTVTDD 91
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 101 bits (241), Expect = 1e-22
Identities = 48/83 (57%), Positives = 62/83 (74%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
R+ +PK+++AAL T+ ARARIL AGGE+LT DQLA RAPTG TVLV+G+++AREA R
Sbjct: 93 RMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYR 152
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG P H PYVR++G +
Sbjct: 153 HFG---FGPHKHKAPYVRSEGRK 172
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 181 RLA--RHMKXPTREGLIAVVVGTVTNE 255
++A K + + VVVGTVT++
Sbjct: 65 KIAALTSRKSASSQNKTTVVVGTVTDD 91
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 28.7 bits (61), Expect = 0.62
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 509 LFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTMSQLIKSKN 345
LF+S G IG ++ C++ I+++ Y Y LL T+S LI +++
Sbjct: 630 LFLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 264 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLAH 371
Y+IP + + + TE+A+ R G+IL D + H
Sbjct: 63 YEIPFLLIKHIENTEEAKLRFALPQGQILEIDTIYH 98
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 353 SKNFSSSSQNACTSFFGNMKSSHRH 279
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 350 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPT 234
KN+ SS + TS + N+ +S+R +R +QS + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 377 STMSQLIKSKN--FSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTTTAIKP 216
ST+ +K+ N F S ++ + N+K++H H+ +SHSF T KP
Sbjct: 306 STIQSPLKTSNSFFKELSPHSQITL-SNVKNNHSHVGSQTKSHSFATPSVFDNNKP 360
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -2
Query: 398 YCLLASRSTMSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTTTA 225
Y + +ST + + S F+ +QN+ + F N +S + + Q++ PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRDMKSKAQSS 525
+ +W VS + CV L L+ +HR++ L M P KS SS
Sbjct: 30 KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -2
Query: 458 SWSRAKVTHCLTSISLTLYQYCLLASRSTMSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 279
S S + + TS S + +S S+ S S + SSSS + +S + +SHR
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181
Query: 278 LRYLVQSHSFVTVPTTT 228
+ S+ P TT
Sbjct: 182 TSHKSSSYRPTVFPYTT 198
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 357 DQLAHRAPTGKKTVLVQGQRNAREAVRHFGPA 452
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 5.8
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 512 LLFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTMSQLIKS----KN 345
LL +SLGA+ G W RA + C I L+ + + T + KN
Sbjct: 304 LLGISLGASSG-------KWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKN 355
Query: 344 FSSSSQNACTSFF 306
SS++ AC+SFF
Sbjct: 356 RSSAALLACSSFF 368
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 411 QRNAREAVRHFGPAPGAPRSHTKP---YVRTKGHEKQGPVVVLMS 536
+R E + H G SH K Y+R+ GHEK+G V + S
Sbjct: 416 KRKVTEILLHQLGFKGISLSHGKEIVRYLRSLGHEKEGQGVFMKS 460
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 391 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 480
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,718
Number of Sequences: 5004
Number of extensions: 47019
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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