Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00274X
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 125 3e-29
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 123 9e-29
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 105 2e-23
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 4.5
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 4.5
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 28 4.5
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 5.9
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 125 bits (301), Expect = 3e-29
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
R+Y++P M VAAL TE ARARI+ AGGE LTFDQLA RAP G+ TVL++G +NAREAV+
Sbjct: 98 RIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVK 157
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFGPAPG P S+TKPYVR+KG +
Sbjct: 158 HFGPAPGVPHSNTKPYVRSKGRK 180
Score = 64.5 bits (150), Expect = 6e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 196 M--KXPTREGL----IAVVVGTVTNE 255
M K P R + IAV+VGTVT++
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDD 96
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 123 bits (297), Expect = 9e-29
Identities = 58/83 (69%), Positives = 67/83 (80%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
R+ +IPKM V AL TE ARARI+ AGGE LTFDQLA RAP G+ TVL++G +NAREAVR
Sbjct: 91 RIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVR 150
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG APG P SHTKPYVR+KG +
Sbjct: 151 HFGKAPGVPHSHTKPYVRSKGRK 173
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 196 MKXPTREGLIAVVVGTVTNE 255
M+ E IAV+VGTVT++
Sbjct: 71 MEG-KEENNIAVIVGTVTDD 89
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 105 bits (252), Expect = 2e-23
Identities = 56/100 (56%), Positives = 68/100 (68%), Gaps = 17/100 (17%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKT-------------- 395
R+Y++P M VAAL TE ARARI+ GGE LTFDQLA RAP G+ T
Sbjct: 90 RVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFA 149
Query: 396 ---VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 506
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +
Sbjct: 150 LLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 196 MKXPTREGLIAVVVGTVTNE 255
M+ +E IAV+VGTVT++
Sbjct: 71 MEG--KENQIAVIVGTVTDD 88
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 28.3 bits (60), Expect = 4.5
Identities = 30/132 (22%), Positives = 55/132 (41%)
Frame = +3
Query: 117 QSDRSTPALYEPYQPATNLCVSFGAPHEXANS*GFDCRGSGDSHK*VRLYKIPKMTVAAL 296
QS +++P + +PA + G H + G DC + +H+ +P+ V+
Sbjct: 433 QSMKASPHTTDGNRPAPSCGPLLGGSHLLSRCCGGDCSAATTTHEHDTKASLPRSFVS-- 490
Query: 297 HVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHT 476
+ + + + L + H A GK + G+ + R + HF AP +P S
Sbjct: 491 --SSSLPSWLQHCRDQQL--QESTHFADLGKTWGSICGKPSQRMTL-HFS-APVSPASSI 544
Query: 477 KPYVRTKGHEKQ 512
Y GH++Q
Sbjct: 545 SSYEHGHGHQQQ 556
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 254 SETVQDTEDDGGCSSCYRKSS 316
SE VQ +DD G S C R+SS
Sbjct: 252 SENVQSDDDDSGPSQCMRESS 272
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 28.3 bits (60), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 273 VSCTVSLICDCPHYHGN 223
+ C+ S +C CPHY G+
Sbjct: 1 MGCSPSKVCSCPHYKGS 17
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 506 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTMSQLIKSKNFSSSSQ 327
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 326 NACTSFFG-NMKSSHRHLRY 270
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,025
Number of Sequences: 37544
Number of extensions: 353069
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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