Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00274X
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   7e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      28   6.1  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        28   6.1  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 46/73 (63%), Positives = 55/73 (75%)
 Frame = +3

Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
           R++++P + + AL  +E ARARIL AGGEILTFDQLA RAP G+ TVL+QG R AREA R
Sbjct: 198 RIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAER 257

Query: 438 HFGPAPGAPRSHT 476
           H G APG P S T
Sbjct: 258 HMGLAPGVPHSDT 270



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 37/85 (43%), Positives = 50/85 (58%)
 Frame = +1

Query: 1   INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
           I  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S++
Sbjct: 112 IEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLA 171

Query: 181 RLARHMKXPTREGLIAVVVGTVTNE 255
           RL R MK    +  I VVVG++T++
Sbjct: 172 RLVRKMKASGHKDKICVVVGSITDD 196


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 380 RSTMSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTT 231
           R+  S L+ S+N   ++QNA T+FF + K  H +  Y           TT
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSYTASDQDAYLQHTT 65


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 339 GEILTFDQLAHRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 470
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 423  REAVRHFGPAPGAPRSHTKPYVRTKGHEKQGPVVV 527
            ++AV+   PAP APR    P V+  G ++  PV++
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 419  ISLTLYQYCLLASRSTMSQLIKSKNFSSSSQ 327
            I+  +Y Y +   + T+SQL K KN S  SQ
Sbjct: 1273 INPVIYSYLVPEFKKTISQLFKQKNASQCSQ 1303


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 458  SWSRAKVTHCLTSISLTLYQYCLLASRSTM 369
            +W RAKV HC +S S+T+ QY    +  T+
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QYIDYGNSETL 2567


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 228 GNQTLTSWXLHVARQTRHRDWWP 160
           G  T + W LH ++Q RH+  WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,387,191
Number of Sequences: 59808
Number of extensions: 383820
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)