Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00274X
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   130   5e-31

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  130 bits (315), Expect = 5e-31
 Identities = 59/83 (71%), Positives = 71/83 (85%)
 Frame = +3

Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAVR 437
           RLY +PK++VAALHVTE ARARILAAGGEI+T DQLA ++P G+ TV +QG R+AREA +
Sbjct: 91  RLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEK 150

Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
           HFGPAPG P SHTKPYVR+KG +
Sbjct: 151 HFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 36/85 (42%), Positives = 48/85 (56%)
 Frame = +1

Query: 1   INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
           INHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S++
Sbjct: 5   INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLA 64

Query: 181 RLARHMKXPTREGLIAVVVGTVTNE 255
           +LAR ++    E    V + TVT++
Sbjct: 65  KLARAVQKAGNENKTVVTLSTVTDD 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,257
Number of Sequences: 27780
Number of extensions: 290654
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)