Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00274X
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 121 4e-28
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 119 2e-27
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 109 1e-24
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.40
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.53
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 30 1.2
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 29 2.8
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi... 28 3.7
At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1 ... 27 6.5
At1g32190.1 68414.m03959 expressed protein 27 6.5
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 121 bits (291), Expect = 4e-28
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAV 434
+R+++IP M V AL TE+ARARI AGGE LTFDQLA RAP G+ TVL++G +N+REAV
Sbjct: 89 LRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAV 148
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
+HFGPAPG P SH+KPYVR KG +
Sbjct: 149 KHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +1
Query: 19 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 198
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 199 KXPTREGLIAVVVGTVTNE 255
+E IAV+VGT+T++
Sbjct: 72 TG--KEDKIAVLVGTITDD 88
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 119 bits (286), Expect = 2e-27
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQRNAREAV 434
+R+++IP M V AL TE+ARARI AGGE LTFDQLA RAP G+ TVL++G +N+REAV
Sbjct: 89 LRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAV 148
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
+HFGPAPG P S+TKPYVR KG +
Sbjct: 149 KHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = +1
Query: 19 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 198
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 199 KXPTREGLIAVVVGTVTNE 255
++ IAV+VGT+T++
Sbjct: 72 TG--KDDKIAVLVGTITDD 88
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 109 bits (262), Expect = 1e-24
Identities = 53/83 (63%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAHRAPT-GKKTVLVQGQRNAREA 431
VR+ +P +TV AL TE ARARI AGGE LTFDQLA PT + TVL++G +N REA
Sbjct: 36 VRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREA 95
Query: 432 VRHFGPAPGAPRSHTKPYVRTKG 500
V+HFGPAPG P SHTKPYVR G
Sbjct: 96 VKHFGPAPGVPHSHTKPYVRQTG 118
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +1
Query: 145 MSRINRPPISVSRLARHMKXPTREGLIAVVVGTVTNE 255
MS++N+ P+S+SRL R+M ++G IAV+VGTVT++
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDD 35
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 447 GQSDALPHEHFADLVPVLSSCQSEHDEPADQ 355
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.53
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 290 CSSCYRKSSCTHFGCWRRNSYF 355
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 431 CLTSISLTLYQYCLLASRSTMSQLIKSKNFSSSSQNACTSF 309
CL S++ TL L +S++++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 118 NQIVLRRLFMSRINRPPISVSRLARHMKXPTREGLI 225
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 570
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 345 FLLQQPKCVHELFR*HEEQPPSSSVSCTVSLIC 247
F+ + K H + H QP S SC + L+C
Sbjct: 395 FVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427
>At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]; may be involved
in wax biosynthesis; contains a SUR2-type
hydroxylase/desaturase catalytic domain (PS50242)
Length = 493
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +3
Query: 294 LHVTEKARARILAAGGEILTFDQLAHRAPTGKKTVLVQGQ--RNAREAVRHF-GPAPGAP 464
++V + +I G L + + H P G K VL +GQ + AR V A P
Sbjct: 414 MYVRRHPKLKIRIVDGGSLAAEVVLHSIPVGTKEVLFRGQITKVARAIVFSLCQNAIKVP 473
Query: 465 RSHTKPYVRTKGHEKQGP 518
T TKG GP
Sbjct: 474 SFSTNGESETKGFNLDGP 491
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 290 CSSCYRKSSCTHFGCWR 340
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,313
Number of Sequences: 28952
Number of extensions: 266171
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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