Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1XGA1 Cluster: Ribosomal protein L2; n=2; cellular org...    35   1.9  
UniRef50_P26859 Cluster: Mitochondrial 60S ribosomal protein L2;...    34   3.3  
UniRef50_Q83HR1 Cluster: Peptidyl-prolyl cis-trans isomerase; n=...    33   7.7  

>UniRef50_Q1XGA1 Cluster: Ribosomal protein L2; n=2; cellular
           organisms|Rep: Ribosomal protein L2 - Physcomitrella
           patens (Moss)
          Length = 463

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 356 FQRKVSSQGSNVMTLLTLTQRSGSEARPTEKI----GENSVGCVCGLIYSPSSSSTVRLK 189
           F+ K  S G N    +T+  R G   R   KI      +S+G V  + Y P+ SS + L 
Sbjct: 8   FRLKKKSAGRNSSGRITVFHRGGGSKRLHRKIDFQRNTSSIGLVQRIDYDPNRSSWIALV 67

Query: 188 RWL 180
           RWL
Sbjct: 68  RWL 70


>UniRef50_P26859 Cluster: Mitochondrial 60S ribosomal protein L2;
           n=2; Embryophyta|Rep: Mitochondrial 60S ribosomal
           protein L2 - Marchantia polymorpha (Liverwort)
          Length = 501

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -2

Query: 356 FQRKVSSQGSNVMTLLTLTQRSGSEARPTEKI----GENSVGCVCGLIYSPSSSSTVRLK 189
           F  K +S G N    +T+  R G   R   KI      +S+G V  + Y P+ SS + L 
Sbjct: 16  FHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALV 75

Query: 188 RWLMLGVLK 162
           RW+  GVL+
Sbjct: 76  RWIE-GVLR 83


>UniRef50_Q83HR1 Cluster: Peptidyl-prolyl cis-trans isomerase; n=2;
           Tropheryma whipplei|Rep: Peptidyl-prolyl cis-trans
           isomerase - Tropheryma whipplei (strain TW08/27)
           (Whipple's bacillus)
          Length = 294

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 21/86 (24%), Positives = 41/86 (47%)
 Frame = -2

Query: 386 PT*ADGLKRPFQRKVSSQGSNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSS 207
           PT  D    P    V++     ++++TL + SG   +PT+K+  + VG +       SS 
Sbjct: 168 PTVVDSANGPKILPVTAPAPQALSVVTLIEGSGHPVKPTDKVTVHYVGALWSGKVFDSSW 227

Query: 206 STVRLKRWLMLGVLKSTISGSRGSEM 129
           +      +L+ G++K    G  G+++
Sbjct: 228 NRRAPAEFLLDGLIKGVKDGLVGAKV 253


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,769,522
Number of Sequences: 1657284
Number of extensions: 12653301
Number of successful extensions: 29188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29184
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)