Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    29   0.95 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   5.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   5.1  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.9  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 318 DVANTNPKIRIRSATH 271
           DV +TNPKI +RS TH
Sbjct: 59  DVLHTNPKIEVRSETH 74


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 640 FTLLVIAL*VVFRKTGFGCFCSLFIY 717
           F LL+ +L ++   TGF CF   FI+
Sbjct: 538 FLLLISSLFIIAGNTGFPCFFRTFIW 563


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 160 LLSTPSISHRFSRTVDEELGE*INPQTQPTEFSPIFSVGRASDPDLWVSVSN 315
           LL T  +S    + ++  L   ++  T  T F P  S G ASD ++ V   N
Sbjct: 91  LLVTLKVSTSLGQKIENILHPKLSNDTNSTAFPPAKSSGEASDTNILVENIN 142


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -3

Query: 601 PVGLFRASGHPFGELRAT---LATLRRGSILSTLNTISRKGYLINLMVLRCIW*FLSIVL 431
           P+ +F+  GH FG L  T   ++T+     LS L T+    ++   +       + S+V 
Sbjct: 75  PLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMT--YFSLVP 132

Query: 430 *CFGKLIEC 404
             FG  + C
Sbjct: 133 LTFGVTLAC 141


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 126 RHFGSSRSTNGAFKYPKHQPS 188
           R F SS  +NGA   P H PS
Sbjct: 160 RSFFSSSMSNGAMSPPSHSPS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,827
Number of Sequences: 5004
Number of extensions: 56771
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)