Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.082
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)                   33   0.33 
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               31   1.0  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.8  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         30   2.3  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50724| Best HMM Match : N_methyl (HMM E-Value=0.57)                 28   9.5  

>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 353 QRKVSSQG-SNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKRWLM 177
           +RKV+ +G S   T  TLT RS S  RP    G+N+    CGL+  P+++S  + ++   
Sbjct: 644 KRKVAREGPSQSKTSPTLTTRSNSTTRP----GQNNPWSRCGLLSCPTTTSPAKRRKTPS 699

Query: 176 LGVLKSTISGSRGSEMTC 123
              L   +S S      C
Sbjct: 700 WRTLAPALSPSATQPAAC 717


>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 353 QRKVSSQG-SNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKRWLM 177
           +RKV+ +G S   T  TLT RS S  RP    G+N+    CGL+  P+++S  + ++   
Sbjct: 67  KRKVTREGPSQSKTSPTLTTRSNSTTRP----GQNNPCSRCGLLSCPTTTSPEKRRKTPS 122

Query: 176 LGVLKSTISGSRGSEMTC 123
              L   +S S      C
Sbjct: 123 WRTLAPALSPSATQPAAC 140


>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
          Length = 1178

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 347  KVSSQG-SNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKRWLMLG 171
            KV+ +G S   T  TLT RS S  RP    G+N+    CGL+  P ++S  + ++     
Sbjct: 922  KVAREGPSQSKTSPTLTMRSNSTTRP----GKNNPWSRCGLLSRPITTSPAKRRKTPSWR 977

Query: 170  VLKSTISGSRGSEMTC 123
            +L   +S S      C
Sbjct: 978  ILAPALSPSATQLAAC 993


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 290 GSEARPTEKIGENSVGCVCGLIYSPSSSSTVRL 192
           GS+  PTE + E+SV  +CG+    S++S  +L
Sbjct: 4   GSQNSPTEDVDEDSVFMICGICRKSSATSNPKL 36


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 365  KRPFQRKVSSQGSNVMTLLTLTQRSGSEARPTEKIGENSV 246
            K+ F R  SS  S +    T  +RSG+   P E+ GE+SV
Sbjct: 980  KKSFARGHSSVASPIRDKKTRRERSGTRPSPGERTGESSV 1019


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 226  INPQTQPTEFSPIFS-VGRASDPDLWVSVSNVITFEP 333
            +N  + PT FS + S V +   P +W ++S+  TF P
Sbjct: 1152 VNTSSLPTAFSNLLSHVSQTLSPSIWNNISHPSTFNP 1188


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 353  QRKVSSQG-SNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKR 186
            +RKV+ +G S      TLT RS    RP +    N+    CGL+ SP+++S  + ++
Sbjct: 1157 KRKVAREGPSQSKASPTLTTRSNFTTRPDQ----NNSWSQCGLLSSPTTTSPAKRRK 1209


>SB_50724| Best HMM Match : N_methyl (HMM E-Value=0.57)
          Length = 343

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 1   ERSWPDFYHVTSQKNYVFIVIFLSIVLRGNSSTTL*RLFFIHVISDPLDPLMVLLSTPSI 180
           E SWPD  H  S+ + V   + L +    + +T   +L   H I    D   V  S+ ++
Sbjct: 38  EESWPDLPHRPSRTSEVEKQLALPMASSSSMATPQLKLLAPHAI----DSNRVFNSSIAL 93

Query: 181 SHRFSRTVDEEL 216
              F R VD +L
Sbjct: 94  DSNFKRAVDFQL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,742,103
Number of Sequences: 59808
Number of extensions: 401886
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)