Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 18  FLSCYVAKKLRFYCDFFEYCLTRKFQYYIVKIVLYTRHF 134
           FL   ++   R  C F E+ LT      I+ I+L T+HF
Sbjct: 551 FLFIIISIPCRLACSFHEFFLTIDNTMAIISILLVTQHF 589


>Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 18  FLSCYVAKKLRFYCDFFEYCLTRKFQYYIVKIVLYTRHF 134
           FL   ++   R  C F E+ LT      I+ I+L T+HF
Sbjct: 551 FLFIIISIPCRLACSFHEFFLTIDNTMAIISILLVTQHF 589


>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 472 SNLSSSLFYLWY*ESKELTRVGGSQALHVVHRK 570
           S ++ S FY+WY  SKE   V GS  +  V R+
Sbjct: 7   SKIAKSHFYVWYLGSKEADGVRGSAVVLPVMRQ 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,064
Number of Sequences: 27780
Number of extensions: 303581
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)