Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    28   0.083
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.4  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   4.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -2

Query: 353 QRKVSSQGSNVMTLLTLTQRSGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKRWLML 174
           Q +V +QG N + + ++   +  E   + K  E+SVG  C ++Y  +  S   + R   L
Sbjct: 139 QLQVDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGGKCEVLYDIAPLSDFVIHRSPEL 198

Query: 173 GVLKSTISGSRGSEMTCIKN 114
             + +     R  E+  IKN
Sbjct: 199 VPMPTLKGDGRHMEVIKIKN 218


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 588 SGLVDTLSVNYVQRLRPSDAG 526
           S ++D+ SV+Y +R+RP+  G
Sbjct: 13  SAILDSFSVSYDKRVRPNYGG 33


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 588 SGLVDTLSVNYVQRLRPSDAG 526
           S ++D+ SV+Y +R+RP+  G
Sbjct: 13  SAILDSFSVSYDKRVRPNYGG 33


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 371 GLKRPFQRKVSSQGSNVMTLLTLTQRSGSEARPTEKI 261
           GL  P    VSS  + V+TL  + +R+G+  R   KI
Sbjct: 73  GLIVPVFTIVSSYAAIVLTLKKVRKRAGASGRREAKI 109


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 475 LMVLRCIW*FLSIVL 431
           + +LRCI+ FLS++L
Sbjct: 2   ISMLRCIYLFLSVIL 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,945
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)