Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00273
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39830.1 68415.m04892 LIM domain-containing protein contains ...    29   3.4  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    29   4.4  
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3...    28   5.9  
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3...    28   5.9  
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    28   5.9  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    28   5.9  

>At2g39830.1 68415.m04892 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 503

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 293 SGSEARPTEKIGENSVGCVCGLIYSPSSSSTVRLKRW-LMLGVLKSTISGSRG 138
           S S +    ++   S  C+ G + S SSSST R K+W LM  V K   SGS G
Sbjct: 11  SPSSSYGVARVSHISNPCIFGEVGS-SSSSTYRDKKWKLMKWVSKLFKSGSNG 62


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -2

Query: 338 SQGSNVMTLLTLTQRSGSEARPTEKI----GENSVGCVCGLIYSPSSSSTVRLKRWLMLG 171
           S G N    +T+  R G   R   +I      +S+G V  + Y P+ SS +   RW+  G
Sbjct: 19  SAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKGG 78

Query: 170 VLK 162
             K
Sbjct: 79  CQK 81


>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 670 VFRKTGFGCFCSLFIYLFK*VLPHHKH 750
           +F   G  CF +LFIY FK V    +H
Sbjct: 832 LFLVCGISCFIALFIYFFKIVRDFFRH 858


>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 670 VFRKTGFGCFCSLFIYLFK*VLPHHKH 750
           +F   G  CF +LFIY FK V    +H
Sbjct: 832 LFLVCGISCFIALFIYFFKIVRDFFRH 858


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 946

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 55  IVIFLSIVLRGNSSTTL*RLFFIHVISDPLDPLMVLLSTP 174
           IV FLS  L GN+  T  +L ++++I D L  L +    P
Sbjct: 755 IVNFLSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPP 794


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 55  IVIFLSIVLRGNSSTTL*RLFFIHVISDPLDPLMVLLSTP 174
           IV FLS  L GN+  T  +L ++++I D L  L +    P
Sbjct: 829 IVNFLSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPP 868


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,371
Number of Sequences: 28952
Number of extensions: 285746
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)