Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00272
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 97 1e-20
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 64 2e-18
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 40 0.003
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 30 1.7
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234... 29 4.0
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 5.2
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 28 6.9
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 28 6.9
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 6.9
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 28 9.2
07_01_1151 - 10822616-10823863 28 9.2
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 97.5 bits (232), Expect = 1e-20
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +2
Query: 257 LPSILLNSHMDVVPVFENSWKHPPFAA--EIEDNVIYARGVQDMKSVGIQYIEAVRRLKE 430
LPS+LLNSH+D VP W HPPFAA + +YARG QD K + IQY+EA+R L++
Sbjct: 102 LPSLLLNSHLDSVPAEPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIRGLRD 161
Query: 431 TGVKLKRTVHLSFVPDEEIGGDTG 502
G RT+H+S VPDEEIGG G
Sbjct: 162 AGFAPTRTLHISLVPDEEIGGADG 185
Score = 64.5 bits (150), Expect = 9e-11
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 508 EFVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPDNCG 687
+F Q++ F+++NVGF LDEG AS D++ VF G+R++W + + G GHGS L
Sbjct: 188 KFAQSEEFRDLNVGFMLDEGQASLTDEFRVFYGDRLVWRLIVKATGAPGHGSKLFDGAAV 247
Query: 688 EKLRYIIDKFMDLRQ 732
E L ++ R+
Sbjct: 248 ENLMDCVETIAGFRE 262
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +3
Query: 18 FCLISAML-RIHTTSSVKIDPS-VSTLQNYLRIRSVHPNVDYNECINFLKNEAEKIGLQV 191
F L+SA++ R + +++ + + Q+YLRIR+ HP+ DY FL A +GL+
Sbjct: 18 FLLLSAVVARPAAGAFTELESAQIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLGLRA 77
Query: 192 QVVE--PLPKKPTLVMTWLGEQPS 257
+ P KP L++TW G PS
Sbjct: 78 ATLHFTPCKSKPLLLLTWPGTDPS 101
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 63.7 bits (148), Expect = 2e-10
Identities = 31/73 (42%), Positives = 41/73 (56%)
Frame = +1
Query: 511 FVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPDNCGE 690
FV + FK+MNVG LDEG+ASP ++Y VF GER W + I G GHG+ L + E
Sbjct: 207 FVASKEFKDMNVGLVLDEGLASPGEEYRVFYGERSPWWLTIKAKGAPGHGAKLYDGSAME 266
Query: 691 KLRYIIDKFMDLR 729
L ++ R
Sbjct: 267 NLMKSVEAIRRFR 279
Score = 58.4 bits (135), Expect(2) = 2e-18
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +2
Query: 377 DMKSVGIQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGGDTGM 505
DMK VG+QY+EA+RRL+ G R ++L+FVPDEEIGG G+
Sbjct: 162 DMKCVGMQYLEAIRRLRSAGFIPDRNIYLTFVPDEEIGGHEGI 204
Score = 52.0 bits (119), Expect(2) = 2e-18
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Frame = +2
Query: 257 LPSILLNSHMDVVPVFENSWKHPPFAAEIED--NVIYARGVQ 376
LPS+LLNSH DVVP + W HPPF+A +++ IYARG Q
Sbjct: 90 LPSLLLNSHTDVVPSEPHKWDHPPFSAALDEASGRIYARGSQ 131
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +3
Query: 54 TSSVKIDPSVSTLQNYLRIRSVHPNVDYNECINFLKNEAEKIGLQVQVVEPLPKKPTLVM 233
+SS + VS + YLRI + P DY + FL+ +A GL+ + +E + KP L++
Sbjct: 22 SSSDAEEAVVSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLL 81
Query: 234 TWLGEQPS 257
W G +PS
Sbjct: 82 RWPGRRPS 89
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 281 HMDVVPVFENSWKHPPFAA--EIED-NVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKR 451
HMDVVP + W PF+ + ED + + RG D + +RRL E LK
Sbjct: 99 HMDVVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHVALVAQLMRRLGEVKPVLKH 158
Query: 452 TVHLSFVPDEEIGGDTGMG 508
+V F+ +EE TG+G
Sbjct: 159 SVIAVFIANEENSLITGIG 177
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 257 LPSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETG 436
LP ++L++ +PV KH P + + R + ++ SVG+ + R + G
Sbjct: 775 LPHVILSA----IPVI----KHNP---DFMSGKVAFRNIMNIVSVGVDTLINERTTQTYG 823
Query: 437 VKLKRTVHLSF 469
+ L++TVHLSF
Sbjct: 824 ILLEKTVHLSF 834
>03_05_0195 -
21822418-21822441,21822480-21822659,21823337-21823453,
21824347-21824412,21825592-21825683,21825924-21825987,
21826098-21826176,21826248-21826387,21827253-21827334,
21827565-21827572,21828005-21828103,21828208-21828285,
21828379-21828472,21828726-21828823,21830299-21830502
Length = 474
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 302 FENSWK-----HPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVHLS 466
F+N W+ P E DN++ DM ++Y+E V +LKE VK +
Sbjct: 257 FKNLWETHQYSRVPVFEERIDNIVGIAYAMDM----LEYVEEVEKLKEITVKEIAHMPTY 312
Query: 467 FVPD 478
FVPD
Sbjct: 313 FVPD 316
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 132 DYNECI---NFLKNEAEKIGLQVQVVEPLPKKPTLVMTWLGEQPSCRAYYSTLI 284
+YN+ + N ++N+ KI ++ ++ KK TL +TWL + +STL+
Sbjct: 991 EYNDLMSKKNIIENDKSKIKTVIEELDE-KKKETLKVTWLKVNKDFGSIFSTLL 1043
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 51 TTSSVKIDPSVSTLQNYLRIRSVHPNVD 134
T S+ KID + TL+NY+++ H + D
Sbjct: 1288 TVSNDKIDENAHTLENYVKMLRAHQSAD 1315
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 463 VICTRRGDWWRYWNGEFVQTDVFKNMNVGFALDEGVA 573
V CT RG Y +G+ T F N + DEG A
Sbjct: 396 VTCTSRGSLLEYHDGDHKATVPFTNKPDSYTQDEGTA 432
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 127 TLTTMNASTSSKMKLKRLDYKCKWSNLCQ 213
T T NA ++K+ L R Y+ W+ LCQ
Sbjct: 2155 TPTRSNAGDATKVTLARTWYQALWATLCQ 2183
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 424 EGNRCQAQKDCASVICTRRGDWWRYWNGEFVQTDVFKNMNVGF 552
EG A DC S CT G W N +V V+K +V +
Sbjct: 144 EGREISACLDCESRFCTTHGKWHASVNKHWVAL-VYKKPHVAY 185
>07_01_1151 - 10822616-10823863
Length = 415
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = +2
Query: 260 PSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQ 400
P L + + PV+ ++W PP E ++ + +K G+Q
Sbjct: 147 PEPALPGYSSLPPVYRDTWNSPPMGEEAAQALVLLDRMLKLKEQGLQ 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,740,105
Number of Sequences: 37544
Number of extensions: 442569
Number of successful extensions: 1326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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