Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00272
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         63   2e-10
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)                     30   1.8  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   4.1  
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            29   4.1  
SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  29   5.4  
SB_22796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   9.4  

>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/78 (39%), Positives = 48/78 (61%)
 Frame = +2

Query: 269 LLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLK 448
           ++ SH+DVVP    SW  PPF   ++D  I+ RG  D+K+  +  +EAV+ L + G K K
Sbjct: 463 MIASHLDVVPA-PGSWDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQALLKLGQKPK 521

Query: 449 RTVHLSFVPDEEIGGDTG 502
           R+ +L++  DEE+ G  G
Sbjct: 522 RSFYLAYGHDEEVQGADG 539


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 293  VPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVH-LSF 469
            +P  E +++    A+E++D  +   G Q +  V  Q  + +RR K     +   V+  SF
Sbjct: 1005 LPEDERAFRWMLRASELKDGHLLVGGAQHLMLVDTQIKQIIRRFKVLSQPMLNVVYPFSF 1064

Query: 470  VPDEEI---GGDTGM 505
            + DE++    GDTG+
Sbjct: 1065 LDDEKLVAAMGDTGV 1079


>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
          Length = 1072

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 382 EVGWNSVH*GREEAEGNRCQAQ-KDCASVICTRRGDWW 492
           E  W  V   R E+   +C+   KD  S++C ++ +WW
Sbjct: 514 ERAWRQV--ARNESLNTKCKLNNKDLVSLVCLQKAEWW 549


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 51   TTSSVKIDPSVSTLQNYLR-IRSVHPNV--DYNECINFLK--NEAEKIGLQVQVVEPLPK 215
            T+S +  +  V +L+N L  +++ H  V  + ++ I  LK  N+ +  GLQ  + EPLP 
Sbjct: 781  TSSDLNSNQRVKSLENSLDFLQAQHSQVLDNLHDEIERLKEENKGQNQGLQASIPEPLPY 840

Query: 216  KPTLVMTWLGEQPSC 260
            K    ++     P C
Sbjct: 841  KQVNALSISETAPIC 855


>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 79  ASRPYRTILEYVQYIRTLTTMNASTSSKMKLKRLDYKCKWSNLCQR 216
           +SR  R +LE  +YI T+ TM+ S +     + +DY    +N+  R
Sbjct: 178 SSRKKRAVLE-TKYIETMITMDKSATDYYGNRSMDYALAVANMASR 222


>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 669 QKGTVTGFSGTSDFHMPNYSFAIEDQVV 586
           +K T+TGF GT     PN   AI+D+VV
Sbjct: 268 EKSTLTGFGGTEPLD-PNIIAAIKDEVV 294


>SB_22796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 550 FALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPDNCGEKLRY 702
           F L   ++S + DYL+F    II+   + C GK    +L  P   G+K +Y
Sbjct: 26  FLLYSKMSSIDTDYLMFAAIGIIYCALVVCIGKDAFRALFTP---GKKEQY 73


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 693 LFAAVVWEQKGTVTGFSGTSDFHMPNYSFAIEDQVVIVRGCDALIESEPDIH 538
           LF A+    K  +   S    FH  +Y  ++ ++ V   G   L+ S+ D+H
Sbjct: 451 LFEAIPESLKNMLLVMSTAGIFHQEDYMLSLGNRPVEPSGSARLVRSDSDVH 502


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,938,438
Number of Sequences: 59808
Number of extensions: 506210
Number of successful extensions: 1408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)