Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00271
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    29   0.053
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.1  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 121 WANSRSTPRSEASSLISVYPSLSTWVRTPSRCWTTRCTSGS 243
           WA   STP ++ S  +   P    WV   S   T R T+ S
Sbjct: 412 WARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVS 452


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 438 RWPDYSPVSDSHRRG 482
           ++ +YS V D HRRG
Sbjct: 228 KYTNYSAVQDLHRRG 242


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 438 RWPDYSPVSDSHRRG 482
           ++ +YS V D HRRG
Sbjct: 235 KYTNYSAVQDLHRRG 249


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 630 QEQTGGGLNVHKERFAQDHAPV 695
           +E++GG  + +K     DH+PV
Sbjct: 51  EEKSGGSYSSNKNVSRADHSPV 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,559
Number of Sequences: 336
Number of extensions: 2973
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)