Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00271
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 3.1
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 29 5.4
SB_22709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 7.2
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 28 9.5
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35) 28 9.5
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 28 9.5
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 142 bits (345), Expect = 2e-34
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +3
Query: 3 HVYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPI 182
H+ D++ NWP T+V+AIV+TDGERILGLGDLG CGMGIPVGKLALYT GGI P CLP+
Sbjct: 179 HIRDIVSNWPTTEVKAIVMTDGERILGLGDLGCCGMGIPVGKLALYTVCGGIDPEGCLPV 238
Query: 183 TIDVGTNTQSMLDDPLYIGLRQRR 254
IDVGTN + +LDDP YIG+RQ+R
Sbjct: 239 MIDVGTNNEELLDDPFYIGVRQKR 262
Score = 107 bits (256), Expect = 1e-23
Identities = 49/81 (60%), Positives = 59/81 (72%)
Frame = +2
Query: 266 DYDELLDEFMRAVVRRYGQNCLVQFEDFGNANAFRLLEKYRNKYCTFNDDIQXXXXXXXX 445
DYDEL+DEF++A ++R+G L+QFEDFGN NAFR LEKYRNK CTFNDDIQ
Sbjct: 267 DYDELIDEFIQAALQRFGPTTLIQFEDFGNHNAFRFLEKYRNKICTFNDDIQGTAAVAVA 326
Query: 446 XXXXSLRLTQKRLSDNVIVFQ 508
SL++T+ RLSD IVFQ
Sbjct: 327 GVLASLKITKTRLSDQRIVFQ 347
Score = 34.7 bits (76), Expect = 0.082
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 577 EQEARCRIWMVDSKGLIVKNRPEEDLT 657
E++A+ +IW+VDS+GL+VK+R LT
Sbjct: 369 EEQAKKKIWLVDSRGLVVKDRDCGGLT 395
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 466 SETGE*SGHRHGRRPLDVVVESAVLVPILLEEPKSVSVPEVLELHE 329
SE G S H HG E VL+P + EP S P + L+E
Sbjct: 914 SEMGGFSRHAHGYSGRSSPTEEGVLIPDCVSEPVLNSSPSLTPLYE 959
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 155 ASERGVEREFAHRDAHPARAQIAQAQNTFSVGYNNGADVRLR 30
+ E G + + +D + +Q QAQNT + GY N AD L+
Sbjct: 360 SEESGYAIKVSVQDDNSTDSQTPQAQNTQTQGYQNAADQSLQ 401
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 134 ALHRARRHQASSVSTHHYRRGYEHPVDAGR 223
AL R RRH ASS++ ++ RG+ D+ R
Sbjct: 331 ALTRVRRHSASSIN-QNFNRGFSESADSKR 359
>SB_22709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 334 HETVLPVAAHDGAHELVEQLVVV-GAAQRRCRSPMYSGS 221
HE + + H G+HE +LV++ G+ +R R M++GS
Sbjct: 123 HERCMRLVMHTGSHERCMRLVMLTGSYERYMRLVMHTGS 161
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 38 GRPRHCCNRRRTYFGPGRFGRVRDGHPCGQTRALHRARRHQASSVSTHHYRRG 196
GR + C +R++ + G F V GH Q+ + +T YRRG
Sbjct: 382 GRAKTCVHRKQNF--AGEFDSVETGHHHAQSETEQLLSEKPITMTNTKGYRRG 432
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 61 PTENVFXXXXXXXXXXXXSLWANSRSTPRSEASSLISVYPSLSTWVRTPSRCWTTRCTSG 240
P +N F ++W S P SE+ + S Y T ++P+ +T+ G
Sbjct: 2251 PEQNAFGGDSSWASPDMSAIWGEQYSIPSSESLPVSSAYQPSGT--QSPTSTFTSLADLG 2308
Query: 241 SG 246
SG
Sbjct: 2309 SG 2310
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 725 GHFHNFSQGPDGRVVLSES 669
GH+H++S G +G+V L ES
Sbjct: 1324 GHYHSYSLGANGQVALLES 1342
>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
Length = 1076
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 38 GRPRHCCNRRRTYFGPGRFGRVRDGHP-CGQT-RALHRARRHQ 160
G P+ C RR+ + GPGR + +P QT R L RA R +
Sbjct: 1004 GCPQELCERRQRHEGPGRLKTLELHYPRIRQTFRLLTRAERQR 1046
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 568 GTPEQEARCRIWMVDSKGLIVKNRPEEDLTFTRRDSLRTTRPSGPWL 708
GT + CR + S+G V + LTFT + S +T P G W+
Sbjct: 879 GTKKHLTGCRATYLPSQGAHVCRNDGKHLTFTAQSSEQT--PRGKWI 923
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,832,305
Number of Sequences: 59808
Number of extensions: 430584
Number of successful extensions: 1564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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