Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00271
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   125   4e-29
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-depend...    29   2.7  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  125 bits (301), Expect = 4e-29
 Identities = 53/83 (63%), Positives = 67/83 (80%)
 Frame = +3

Query: 6   VYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPIT 185
           ++ +L NWP  +VRAIV+TDGERILGLGDLG  G+GIPVGKLALY AL GI+P  CLP+ 
Sbjct: 171 IHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVI 230

Query: 186 IDVGTNTQSMLDDPLYIGLRQRR 254
           +DVGT+   +L+DP Y GLR++R
Sbjct: 231 LDVGTDNSELLNDPFYTGLRRKR 253



 Score =  101 bits (242), Expect = 6e-22
 Identities = 43/84 (51%), Positives = 60/84 (71%)
 Frame = +2

Query: 254 LRGPDYDELLDEFMRAVVRRYGQNCLVQFEDFGNANAFRLLEKYRNKYCTFNDDIQXXXX 433
           +RGP+YD L+D FM+A  +R+G++ L+QFEDFGN NA+RLL++Y+ +YC FNDDIQ    
Sbjct: 254 VRGPEYDTLVDNFMKAATKRFGRDTLIQFEDFGNQNAYRLLDRYKGEYCMFNDDIQGTAA 313

Query: 434 XXXXXXXXSLRLTQKRLSDNVIVF 505
                   S R+T+K+LS   IVF
Sbjct: 314 VVVAGLLASTRITKKKLSQERIVF 337



 Score = 35.1 bits (77), Expect = 0.055
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 544 CVMAMKGEGTPEQEARCRIWMVDSKGLIVKNR 639
           CV  M  EG  E+EA  RI+MVD +GLI  +R
Sbjct: 351 CVRQMMDEGLSEEEACGRIYMVDIEGLITTSR 382



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 669 RFAQDHAPVRTLAEVVEVARPSVLIGAAAI 758
           +FA+D    + L EVV+  +P  LIGA+ +
Sbjct: 392 KFAKDLPDTKNLLEVVKTVKPGALIGASTV 421


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 385 ILLEEPKSVSVPEVLELHETVLPVAAHDGAHELVEQLVVVGAAQRRCRSP 236
           +  E  +SV+ P V   H  ++  A H  AH L+   ++    + RC++P
Sbjct: 724 VFTEVVQSVNRPNVRGTHPAIIDAARHLNAHGLLPSPMLNNEIRVRCKAP 773


>Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical
           protein T05A6.1 protein.
          Length = 184

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 562 GEGTPEQEARCRIWMVDSKGLIVKNRPEEDLTFTRRDSLRTTRPS 696
           G  TPEQ +R RIW+ D+   + + R EE   +     L T  PS
Sbjct: 10  GRPTPEQRSRTRIWLEDA---VKRMRQEESQKWGFDFELETPLPS 51


>AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-dependent
           kinase inhibitor protein.
          Length = 184

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 562 GEGTPEQEARCRIWMVDSKGLIVKNRPEEDLTFTRRDSLRTTRPS 696
           G  TPEQ +R RIW+ D+   + + R EE   +     L T  PS
Sbjct: 10  GRPTPEQRSRTRIWLEDA---VKRMRQEESQKWGFDFELETPLPS 51


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 155  HQASSVSTHHYRRGYEHP 208
            HQ+SS + HHY   Y +P
Sbjct: 1318 HQSSSSNNHHYSHNYSYP 1335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,036
Number of Sequences: 27780
Number of extensions: 305112
Number of successful extensions: 1050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)