Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00271
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 632 LTMRPFESTIQMRHLASCSGVPSP 561
           L  R F+ST  +RH+ S    P P
Sbjct: 311 LAFRVFQSTQYIRHIKSPYHTPEP 334


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 307 HDGAHELVEQLVVVGAAQRRCRSPM-YSGSSSIDWVF 200
           HD  H  +E   V+G +    R P+ Y   + +D VF
Sbjct: 376 HDPDHRYLESFGVMGDSATAMRDPIFYRWHAFVDDVF 412


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 382 LLEEPKSVSVPEVLELHETVLPVAAHDG 299
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 382 LLEEPKSVSVPEVLELHETVLPVAAHDG 299
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 382 LLEEPKSVSVPEVLELHETVLPVAAHDG 299
           L E+P+    P++   +E  L   AH+G
Sbjct: 221 LCEKPEVCDYPDIYSGYEGALRCLAHNG 248


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 670 DSLRTTRPSGPWLKLWK 720
           D++    P  PW K WK
Sbjct: 199 DNMLEPSPKTPWYKGWK 215


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 118 LWANSRSTPRSEASSL 165
           LW +SRST R  A+S+
Sbjct: 274 LWLDSRSTERMIAASV 289


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 591 VPHL-DGGLEGPHRQEQTGG 647
           +P L +GG+E PH+ +Q  G
Sbjct: 10  IPDLRNGGVEHPHQHQQHYG 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,430
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)