Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00270
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 111 6e-25
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 110 8e-25
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.27
11_01_0551 + 4361640-4363386,4363443-4363687 29 3.3
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.4
04_03_0549 - 17043135-17043351,17043641-17043846 29 4.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.4
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.6
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 28 7.6
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 111 bits (266), Expect = 6e-25
Identities = 53/75 (70%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Frame = +3
Query: 33 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 209
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 210 KTRIIDVVYNASNNE 254
KTRI+DVVYNASNNE
Sbjct: 76 KTRILDVVYNASNNE 90
Score = 66.5 bits (155), Expect = 2e-11
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA---------------------- 367
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLY 150
Query: 368 ---KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 508
K +AE K+S RK RQ+ ++ +EEQF +GRLLAC
Sbjct: 151 VMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLAC 200
Score = 64.5 bits (150), Expect = 7e-11
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +1
Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
G ++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 110 bits (265), Expect = 8e-25
Identities = 53/75 (70%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Frame = +3
Query: 33 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 209
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 210 KTRIIDVVYNASNNE 254
KTRI+DVVYNASNNE
Sbjct: 76 KTRILDVVYNASNNE 90
Score = 81.8 bits (193), Expect = 4e-16
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKR 409
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKK 150
Query: 410 SQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 508
S RK RQ+ ++ +EEQF +GRLLAC
Sbjct: 151 SNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLAC 183
Score = 64.5 bits (150), Expect = 7e-11
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +1
Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
G ++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 60 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 194
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 356 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC-WRVAQVSV 532
+ G+ T+A E+I KK+ + +K + + A V A EE+ G + WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 533 VAPMV 547
A +
Sbjct: 349 GADYI 353
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 97 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 255
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -2
Query: 337 IMRLIPLPEWSCIYYNNCILDKGLCTHHSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRS 158
++ L+ +P+WS +YY N +DK L + S++ A + R ++ + KL + +
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL-YNWSMIGAALNDAWNRYVQKDRRHKAGKLKLGHK- 129
Query: 157 ARYLVFPPRER 125
+ FP R++
Sbjct: 130 ---IDFPVRQQ 137
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 199 VQLAKPVSLMLCIMHLTMNGAYKDPCQECNC-CSR 300
+ L++P I+ L A+ +PC+ECN C R
Sbjct: 549 IPLSQPEGDQSAILSLASASAFAEPCEECNLPCQR 583
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 359 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 490
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 193 RNVQLAKPVSLMLCIMHLTMNGAYKDPCQE 282
+++ +++P L +C++HL +G Y D E
Sbjct: 659 KHMHVSQPTDLNICMLHLGSHGVYADSSGE 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,309
Number of Sequences: 37544
Number of extensions: 351691
Number of successful extensions: 1106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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