Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00270
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              119   2e-27
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           33   0.16 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.9  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 29   3.4  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    28   7.8  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  119 bits (286), Expect = 2e-27
 Identities = 53/70 (75%), Positives = 60/70 (85%)
 Frame = +3

Query: 45  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 224
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 225 DVVYNASNNE 254
           DVVYNASNNE
Sbjct: 64  DVVYNASNNE 73



 Score =  114 bits (274), Expect = 7e-26
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = +2

Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 433
           +VRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK 
Sbjct: 74  LVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKL 133

Query: 434 LARQRLAKVEGALEEQFHTGRLLAC 508
            AR+  AKV   +EEQF TGRL AC
Sbjct: 134 EARKANAKVAPGMEEQFVTGRLYAC 158



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
           G     ++SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/50 (30%), Positives = 32/50 (64%)
 Frame = +3

Query: 105 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKE 86


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 359 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 496
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 337 IMRLIPLPEWSCIYYNNCILDKGLCTHHSLLDAL 236
           I ++  LP   CI  N C+ D G+C  H+L   L
Sbjct: 507 IDKIPALPGKICINENECLRDSGICGTHALCSDL 540


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 401 KKRSQKTARKYLARQRLAKVEGALEE 478
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 24  PPDGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR-GGNTKYRALRLDTGNFSWGSEC 200
           PP  K +P+++ R +     + +T   P     V++    N K R+ R      + G   
Sbjct: 478 PP--KESPLQRSRSFSNRSSSKHTIFVPPSHPPVKNGPDANEKERSNRTKVQRTNSGRYI 535

Query: 201 STRKTRIIDVVYNASNNEW 257
           + RKT   +VV + S  EW
Sbjct: 536 TERKTITTEVVKDNSTGEW 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,456
Number of Sequences: 59808
Number of extensions: 402622
Number of successful extensions: 1129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)