Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00270
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 120 9e-28
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 5.1
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 5.1
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 5.1
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 5.1
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 5.1
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 5.1
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 120 bits (289), Expect = 9e-28
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +2
Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 433
+VRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY
Sbjct: 90 LVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKY 149
Query: 434 LARQRLAKVEGALEEQFHTGRLLA 505
RQ+ A V+ L EQF+TGRLLA
Sbjct: 150 TERQKTAAVDALLIEQFNTGRLLA 173
Score = 113 bits (273), Expect = 8e-26
Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +3
Query: 33 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 209
G P+ KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15 GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74
Query: 210 KTRIIDVVYNASNNE 254
KTRI+D +YNA+NNE
Sbjct: 75 KTRIVDTMYNATNNE 89
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +1
Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
G ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 156 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 254
A+++D G+F+WGS+ RK + D+ +N +
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQ 643
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 353 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 478
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,110
Number of Sequences: 27780
Number of extensions: 285716
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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