Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00270
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   110   7e-25
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   109   1e-24
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    30   1.6  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    28   4.8  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  110 bits (265), Expect = 7e-25
 Identities = 50/75 (66%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
 Frame = +3

Query: 33  GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 209
           GK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75

Query: 210 KTRIIDVVYNASNNE 254
           KTR++DVVYNASNNE
Sbjct: 76  KTRVLDVVYNASNNE 90



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 10/95 (10%)
 Frame = +2

Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NK 403
           +VRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +      
Sbjct: 91  LVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEV 150

Query: 404 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 508
           K+S    RK  +RQ    ++  +E+QF +GRLLAC
Sbjct: 151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLAC 185



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +1

Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
           G     ++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/75 (69%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
 Frame = +3

Query: 33  GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 209
           GK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TR
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75

Query: 210 KTRIIDVVYNASNNE 254
           KTRI+DV YNASNNE
Sbjct: 76  KTRILDVAYNASNNE 90



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 42/85 (49%), Positives = 53/85 (62%)
 Frame = +2

Query: 254 MVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 433
           +VRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    RK 
Sbjct: 91  LVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKL 146

Query: 434 LARQRLAKVEGALEEQFHTGRLLAC 508
             RQ    ++  LEEQF +GRLLAC
Sbjct: 147 EMRQEGRALDSHLEEQFSSGRLLAC 171



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +1

Query: 490 GAFAGLLASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 609
           G     +ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 333 CDSYHCLNGVASTTTIAFLTRVFVRTIHC*MHYTQHQ*YGFCELNIPIP 187
           C  Y  L GV S+  +A L+ +  R +   +H+     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 263 TKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 382
           T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 19  TAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,624
Number of Sequences: 28952
Number of extensions: 263690
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)