Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00269
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   8.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.3  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 465 AKICKDNTAHFENYIITFSNRTHRPRQC 548
           +K+C+DN A  E+ +IT  +   R  QC
Sbjct: 28  SKVCRDNIALSEHNVITVLDTPQRSTQC 55


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 688 APIRRTPSTTGFSKELIFMLDRHVGAFLVQRNNIVQFHVVTHAD 557
           A + + PS +   KELI     ++GAFL++  N     V+T+ D
Sbjct: 179 AIVTKNPSVSEAIKELIKKRQPYIGAFLLKDEN-TDTDVITNID 221


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 327  PAFVSPTQSPYSVQPRRIQPP 265
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 437 VPRYPVSCDREDMQRQHGPFRKLHHHVLKSNTSAETMCKIVGMCNNMKLD 586
           +P++P    R D+Q Q GP R L  ++  S  ++ +    V + N+ +LD
Sbjct: 9   LPKFPELKTR-DLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLD 57


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 201 RLRDKYRRMC*GTTSMVRSLKRGAECGAVGHCTATVWEKQKPDVSDNEISSKFVKLFRGL 380
           R R +YRR   G+TS  RS  R          + +V   + P    + + + F+ L  G+
Sbjct: 739 RSRQRYRRSYAGSTSRGRSFSRSPSYRRRLSMSCSVSYSRSP----SPLHALFLALLLGI 794

Query: 381 KDVKDL 398
           KD+  L
Sbjct: 795 KDLMTL 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,712
Number of Sequences: 5004
Number of extensions: 67502
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)