Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00269
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   37   0.014
SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)                32   0.54 
SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      31   1.3  
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)                29   2.9  
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                29   5.1  
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               28   8.9  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 641 QLLGKSRCTWGPSYWCSNFSTGRECNA 721
           + +G  RC +GP+YWC +    +EC+A
Sbjct: 355 KFVGNPRCVYGPAYWCRSLEHAQECDA 381



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 234 GTTSMVRSLKRGAECGAVGHCTATVWE 314
           G     RSL+   EC AV HC  +VW+
Sbjct: 365 GPAYWCRSLEHAQECDAVEHCKNSVWK 391


>SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 524 SNTSAETMCKIVGMCN-NMKLDNIISLNKKSTNVPVKHKDQLLGKSRCTWGPSYWCSNFS 700
           +NT   T+CK +G+C+ N  L     L+K      +  K   L    C  G  YWC++  
Sbjct: 38  ANTDPTTLCKEIGLCSANQHLMKAKILSKHILKAKIVAKRDDL----CYLGAPYWCADRR 93

Query: 701 TGRECNAT 724
               C  +
Sbjct: 94  NAVNCEVS 101


>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 524 SNTSAETMCKIVGMCN-NMKLDNIISLNKKSTNVPVKHKDQLLGKSRCTWGPSYWCSNFS 700
           +NT   T+CK +G+C+ N  +     L+K      +  K   L    C  G  YWC++  
Sbjct: 373 ANTDPTTLCKEIGLCSANQHVMKAKILSKHILKAKIVAKRDDL----CYLGAPYWCADRR 428

Query: 701 TGRECNAT 724
               C  +
Sbjct: 429 NAVNCEVS 436


>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 327 PAFVSPTQSPYSVQPRRIQPPALDFAPYLWS 235
           P FV+P   P +++P+ ++P  L  AP LW+
Sbjct: 53  PTFVTPRIEPQTIEPQPMEP--LRMAPNLWN 81


>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 303 SPYSVQPRRIQPPALDFAPYLWSLSTFFGTCRANDKFV 190
           S     P  +     ++AP++WS S +   C   +KFV
Sbjct: 34  SEEKANPHSVDRMGGEYAPHMWSQSLYIVACLLQEKFV 71


>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +2

Query: 464 REDMQRQHGPFRKLHHHVLKSNTSAETMCKIVGMCNNMKLDNIISLNKKSTNVPVKHKD 640
           R++M  +H      H+ +        T    + MC+N        +N +S N+ ++H D
Sbjct: 269 RDNMNMRHSDMNMRHNDMNMRYNDMNTRHDDINMCHNDMNMRYNDMNMRSDNMNMRHND 327


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +3

Query: 411 YLAASIESACHDIQYPAIAKICKDNTAHFENYIITFSNRTHRPRQCAKSSACVTT*NWTI 590
           Y AAS ES    +++P      +D   +   ++++  +  HR  Q      C+   NW++
Sbjct: 525 YRAASAESFISAVEFPGDLMQFEDEATYMSRFLVSCPHLVHRYSQHLSQLECL---NWSM 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,889,334
Number of Sequences: 59808
Number of extensions: 528627
Number of successful extensions: 1515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)