Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00269
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06580.1 68416.m00764 galactokinase (GAL1) identical to galac...    29   2.4  
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    28   5.5  
At5g47540.1 68418.m05869 Mo25 family protein similar to MO25 pro...    28   7.2  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    28   7.2  
At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein co...    28   7.2  
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ...    27   9.6  

>At3g06580.1 68416.m00764 galactokinase (GAL1) identical to
           galactokinase (Galactose kinase) [Arabidopsis thaliana]
           SWISS-PROT:Q9SEE5
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 378 LKDVKDLINEEYLAASIESACHDIQYPAIAKICKDNTA 491
           LK + DL+NE + + S+   C   +   + ++CK+N A
Sbjct: 392 LKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGA 429


>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 321 FVSPTQSPYSVQPRRIQPPALDFAPY 244
           F SP Q P S  P  IQ P  +F P+
Sbjct: 16  FASPPQQPSSSSPGTIQNPNFNFIPF 41


>At5g47540.1 68418.m05869 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 344

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 324 PDVSDNEISSKFVKLFRGLKDVKDLINEEYLAASIESAC 440
           PD+ D++   K  +L R ++D+K ++     A  +  AC
Sbjct: 33  PDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEAC 71


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 697 KITAPIRRTPSTTGFSKELIFMLDRHVGAFLVQRNNIVQFHVVTHADDFAHCLGRCVRFE 518
           ++   +R+    T  S++   M + HVGA  ++ N+IV+     HA +  H     VR E
Sbjct: 209 RVKDSLRKKEDITSSSRDETPMKEDHVGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRRE 268


>At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 622

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 463 SRRYAKTTRPISKITSSRSQIEHIGRDNVQNRRHV*QHEIGQYY 594
           SRR +++ R  SK TSS  +I+ +  + V + R + Q  IG  Y
Sbjct: 150 SRRLSRSRRSNSKSTSSIREIDLVTPEAVSDLRSIAQRMIGAGY 193


>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1040

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 79  FSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVS 174
           F + + K K+G L  N+ R  DK VCCL   S
Sbjct: 825 FQMLQQKRKSG-LPANFKREHDKKVCCLGLTS 855


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,277
Number of Sequences: 28952
Number of extensions: 353463
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)