Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00268
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    87   1e-18
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    87   1e-18
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.40 
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    28   0.70 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   2.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   4.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.6  

>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 39/72 (54%), Positives = 56/72 (77%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           +NKKTR+ +PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++
Sbjct: 56  NNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVK 115

Query: 434 VTNAAARLRSQE 469
           VTNA A++RSQE
Sbjct: 116 VTNAGAKVRSQE 127



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 32/58 (55%), Positives = 40/58 (68%)
 Frame = +3

Query: 105 IXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRRPVIC 278
           I  KRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG  ++   C
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 87.0 bits (206), Expect = 1e-18
 Identities = 39/72 (54%), Positives = 56/72 (77%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           +NKKTR+ +PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++
Sbjct: 56  NNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVK 115

Query: 434 VTNAAARLRSQE 469
           VTNA A++RSQE
Sbjct: 116 VTNAGAKVRSQE 127



 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 33/58 (56%), Positives = 41/58 (70%)
 Frame = +3

Query: 105 IXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRRPVIC 278
           I  KRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG  ++   C
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 472 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 350
           VL   +   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 296 YGIHLGAYDGSSCWTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IAIRLMPDKS 126
           Y  HLG   G +  T  + G + +T     DS +    + TP+P+KFV  IA+  MP  +
Sbjct: 392 YDHHLG---GINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIAMHSMPRVA 446

Query: 125 LRP 117
           LRP
Sbjct: 447 LRP 449


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 284 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 457
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 458 RSQENE 475
           R +  +
Sbjct: 655 RRESQK 660


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +3

Query: 36  RGSLSR--FLKKHTRWT 80
           RGS SR  F KKH RWT
Sbjct: 931 RGSSSRGAFYKKHNRWT 947


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 129 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 254
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 337 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 468
           D K+    R+      +E  A   K P   + S  C R+PP  G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 356 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 442
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,651
Number of Sequences: 5004
Number of extensions: 38460
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)